Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi817g00086 ATGTACAGAAAAAGGCAGTTACATCAATTGAATCATCCATTCAGTTCTCAGCCCTTTGAAGCAGTTATCTTTGGCTCGTGGCAAGCTGTGGAGCTCCTAAAAATCGAGTCAGGAACTATGACCATGCATTTTTTAGATGATCGTCATATGGCTATGGAGAAAGGCCCCTCCTCAGACATTCGTATAAGGTCAAGGAAAGCTACTTTATCAGATTGCTCCTGCTTATTACGTCCTGGAATTGACATATGCGTGTTATCAGCCCCTCAGCGCACTGATAATTCAGATGAATTTAGTCTCGAACCTGTTTGGGCTGATGCTAAAATAAGTTCTATACAGAGAAAGCCCCATGAATCTGAGTGCTCATGTCAATTTTATGTCAACTTCTATGTTAATCAAGGTTCGCTTGGTGCAGAGATAAGAACTCTTAGTAAGGAGATTAAAATAGTTGGAATCAATCAAATCTCTATCCTCCAAAGACTTGAACATATTCCTTGTGAAAATCAGCCTTACCGGTGGGCTTCATCTGAGGACTGCTCTGCATTATCACAAACTAAATTGCTTTTGGGAAAATTTTTATGTGATCTTTCATGGTTAGTTGCTGCGTCTGTTGTAAAGAAGGTTTCATTTTGTGCAAGATCTGTAGAAAACAAGCTAGTGTATCAAATTTTGGGAAGTAATATTATTAGCACTTCATTGAACACTGAGTCTCATATAAATGTTGTGAATTTCAGAATAGACAATGACGTATTAGTACCTTTTGTTTCTCAAGTTGTTACACATACTATCGAGAGAATTGAGTATGCACATGAATCCCATGAAGATAAAGTGTCTCCATCTTATAATATTGAGGGCTTACGACGTTCCAAACGCCGGAATGTACAACCTGAGCGTTACCTTGGTTGCGATGATGTTTCTGAGTTCGAAGTTGGTTCTTTTAGAACCAGGCCACCAGTTAAGATAGACACATGGGAGGATGATGAATTGTCATTGCCATTATCATGCCTGTTTGGTTTGCAGCAAAACTGTCCAGAAGAGGATGTTAACAATTGTCAAAAGGTCAAGAAGGTGAATACCTGCCGGGAGCTTGTAGTGTACAAGAGGAGGGCTAACAGGAGGGCTAAAACCGGGGAGGTAAAGTTAGGCGATGCTAATCAAAATGAGCATCAAAATCAACTTGCTATTATTCCTTTTCCTGATCAAGGTGATCCAATAGCCCTTGAGCATTATGATGTAAATGACAAGGTTACTAGAAGTTACGGGCATGAATGTACTGAAAATTCTTCCAGATATCATCATCTGAAAAATAGCCCTAAACTAAAGGGGAACAATAAGAGGAGTTTATGTGATCTGGATGACATGGATATTGGAAACAAATGGGAAGGGATAAATTCCAATAAAGGAACTCAAGAGAAAAAATATCATTCTACATATTCAAGAAGTAGAAATCTTGGCGAAGAAAAAACTTATAAAGGCAGAGACAGAACCTTAAATGCAGCTGCCTACAAGGAATTGATAAATTCATACTTAAAGAAAATGAATACAAGACCAGCTAAAGAAGAACCATCTGTTACTGATCAGTGGAAGCAAGTCCAGGCAACAAGCATGTTTGGCCAACCGAAGGAAACAGAGTTATCACATAGAGAGGAGGATGAGGAAGAAATGTCTGAGATAGATATGTTATGGAGAGAAATGGAAGTGTCATTGGCATCAAGTTATCTTAACGAAGACAAAGAGGGTTCAAATGCTGACAATTGTGCTGAGGCTCTGGAGAAATCGACTGAAGTTTGTGAACATGATTATAGATTGAACGAAGAAATTGGAATTTACTGCCTAAAATGTGGCTTTGTGAGGATGGAGATTAAATATGTTTTGCCACCCTTTATAGAACGTTCAGTGTGTCACCAAGAGGATAAGCAGTGTGGTGGAGAATATTCAGGGTCCAAGACTGATGAAGATGATGATTTCCAACTTTGCGCAACTTATGCTTCTCCTGATGAACCTATTTCTGAAGAAAGTGATAACGTTTGGGCATTAATTCCCGAACTTAGAAAAAAGTTGCATGTCCACCAAAAGAAAGCTTTTGAGTTTCTTTGGCAAAATATTGCAGGGTCTATGGAACCAGCTCTTATGGAAGCAGAATCCCGAAAAAGAGGTGGCTGTGTGATATCTCATTCTCCTGGAGCTGGAAAAACTTTACTCATTATTGCTTTTCTTGTTAGCTACTTGAGGTTATTCCCCGGGAAGAGGCCTCTGGTCCTTGCTCCAAAAACAACGCTCTATACTTGGTATAAAGAATTTATCAAGTGGGAAATTCCTGTACCAGTGTATCTGATTCATGGCCGTAGAACCTTCAGGGTATACAAGCAGAAATCAGCAATGGTTTTTCCTGGATTTCCCAAGCCCACTGAGGATGTAAAGCATGTTTTGGATTGCCTGGAAAATATACAAAAGTGGCATTCACACCCAAGTGTTCTAATAATGGGCTATACTTCATTTTTAACATTGATGCGAGAGGATTCAAAGTTTGCACACAGAAAGTATATGGCTAAAGTATTGAGGGAAAGTCCTGGGCTCCTGGTACTGGATGAAGGGCATAATCCAAGAAGCACTAAATCAAGGTTGAGAAAAGTTTTAATGAAAGTAGAGACAAAATTGAGGATATTACTTTCGGGTACATTATTTCAGAACAACTTCTGTGAATACTTCAACACTCTCTGCCTGGCAAGACCAGTGTTTTCTTTTGAAGTTCTGAAAGCATTAGACCCAAAATACAGGAGGAAAAGGAGGGCACCAGAAAAGGCATATCATTTAATAGAGTCACGGGCTAGAAAATTCTTCCTGGATAAAATTGCTAAGAAAATTGACTCAAATATTGGTGACGAGAGGATGGAAGGTCTAAACATGTTGAGGAATGTAACAAATGGTTTTATAGATGTTTATGAAGGTGGGAATTCTGATAGTCTACCTGGTTTACAAATTTACACATTGCTAATGAATACAACTGATGTACAGCATGAGATTTTGCAGATCCTGCACAAGAGAATGGCTAAGTGCAGTGGATACCCTCTGGAGTTAGAGCTTTTGATAACTCTTGGTTCAATACATCCTTGGTTGGTCAAAACAGCTGTCTGTGCTGAAAAGTTTCTCACTAGGGAGCAATTGAAGGAGCTAGATAAATACAAGTTTGATTTAAAAATAGGGTCAAAAGTAAGATTTGTTTTGAGCCTTATCTATCGTGTTGTCAAGAAGGAGAAGATTCTTATCTTTTGTCACAACATTGCACCTGTCAAATTATTTCTAGAATATTTTGAGAAGTACTTTGGATGGAGAAAAGGTCGTGAAGTTTTGGTACTAACTGGGGAACTAGAGCTCTTTGAACGGGGTGTAATAATGGACAAGTTTGAGGAGCCTGGTGGAGTATCAATGATACTCCTTGCTTCAATTACAGCTTGTGCTGAAGGCATTAGTTTGACAGCTGCTTCTCGTGTGATTATGTTGGATTCAGAGTGGAACCCATCAAAAACAAAGCAGGCTATTGCTCGTGCCTTTCGTCCTGGTCAGCAAAAAGTGGTTTATGTGTATCAGCTCTTGGTAACAGGCTCATTGGAGGAAGATAAGTACCGAAGAACCACTTGGAAAGAGTGGGTATCAAGCATGATTTTTAGCGAGGCCTTTGTGGAGGACCCTTCTCAATGGCAAGCTGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGAGGAGGATCGGTCTAAATCATTCCATATGATTATGAAGAATGAAAAAGCTTCAACAAACAGATGA 3804 0.3925 MYRKRQLHQLNHPFSSQPFEAVIFGSWQAVELLKIESGTMTMHFLDDRHMAMEKGPSSDIRIRSRKATLSDCSCLLRPGIDICVLSAPQRTDNSDEFSLEPVWADAKISSIQRKPHESECSCQFYVNFYVNQGSLGAEIRTLSKEIKIVGINQISILQRLEHIPCENQPYRWASSEDCSALSQTKLLLGKFLCDLSWLVAASVVKKVSFCARSVENKLVYQILGSNIISTSLNTESHINVVNFRIDNDVLVPFVSQVVTHTIERIEYAHESHEDKVSPSYNIEGLRRSKRRNVQPERYLGCDDVSEFEVGSFRTRPPVKIDTWEDDELSLPLSCLFGLQQNCPEEDVNNCQKVKKVNTCRELVVYKRRANRRAKTGEVKLGDANQNEHQNQLAIIPFPDQGDPIALEHYDVNDKVTRSYGHECTENSSRYHHLKNSPKLKGNNKRSLCDLDDMDIGNKWEGINSNKGTQEKKYHSTYSRSRNLGEEKTYKGRDRTLNAAAYKELINSYLKKMNTRPAKEEPSVTDQWKQVQATSMFGQPKETELSHREEDEEEMSEIDMLWREMEVSLASSYLNEDKEGSNADNCAEALEKSTEVCEHDYRLNEEIGIYCLKCGFVRMEIKYVLPPFIERSVCHQEDKQCGGEYSGSKTDEDDDFQLCATYASPDEPISEESDNVWALIPELRKKLHVHQKKAFEFLWQNIAGSMEPALMEAESRKRGGCVISHSPGAGKTLLIIAFLVSYLRLFPGKRPLVLAPKTTLYTWYKEFIKWEIPVPVYLIHGRRTFRVYKQKSAMVFPGFPKPTEDVKHVLDCLENIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKYMAKVLRESPGLLVLDEGHNPRSTKSRLRKVLMKVETKLRILLSGTLFQNNFCEYFNTLCLARPVFSFEVLKALDPKYRRKRRAPEKAYHLIESRARKFFLDKIAKKIDSNIGDERMEGLNMLRNVTNGFIDVYEGGNSDSLPGLQIYTLLMNTTDVQHEILQILHKRMAKCSGYPLELELLITLGSIHPWLVKTAVCAEKFLTREQLKELDKYKFDLKIGSKVRFVLSLIYRVVKKEKILIFCHNIAPVKLFLEYFEKYFGWRKGREVLVLTGELELFERGVIMDKFEEPGGVSMILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDILREMVEEDRSKSFHMIMKNEKASTNR 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi817g00086 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 986 1250 IPR027417 -
Gabi817g00086 1267 Pfam SNF2-related domain 683 910 IPR000330 GO:0005524|GO:0140658
Gabi817g00086 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 667 923 IPR027417 -
Gabi817g00086 1267 Pfam Helicase conserved C-terminal domain 1069 1185 IPR001650 -
Gabi817g00086 1267 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 711 911 IPR014001 -
Gabi817g00086 1267 CDD SF2_C_SNF 1061 1197 - -
Gabi817g00086 1267 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 52 1265 IPR044567 GO:0080188
Gabi817g00086 1267 SMART helicmild6 1101 1186 IPR001650 -
Gabi817g00086 1267 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1073 1233 IPR001650 -
Gabi817g00086 1267 CDD DEXHc_ATRX-like 686 912 - -
Gabi817g00086 1267 Gene3D - 992 1267 IPR027417 -
Gabi817g00086 1267 SMART ultradead3 682 926 IPR014001 -
Gabi817g00086 1267 Gene3D - 662 952 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi817g00086 Gabi-Chr817 776604 783414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi817g00086 1065 1204 RAD5 or RAD16-like Gene Family AT5G43530 34.266 3.13e-11 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi817g00086 SNF2_N 1e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi817g00086 K10875 - gmx:100811703 1906.34