Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi817g00066 ATGAATGATATTCTATCCGCGATGATGATCACCCAAGGCTTGTTACCATCTGGGTCTTTGCTAGATTCATTGATTCACATATCCAATGAACTTGGCTCAATGGAGAATTTTCCCTTCATACAAATAAGGAATGTTTCATCCATGATAAGGAGGATCAAGCTTCTATCTTCTTTGTTCGAAGAGATTCAAGAAACAGATACCCCACTTCCTCCTTCTTCAATCCTGTGTTTCACAGAGCTCTTCTCTGTAATTAGAAGAGTGAAGGTTTTGATCCAAGAGTGCAAGGATGGAAGCTCTCTTTGGGGTCTCATTCAGTTAGAGTTCATTTCAAACCAATTTTATGTGCTTGCAAAGGAGATGGGAAGAGCCCTTGATATCCTTCCTCTGAAGTTGCTTAACGTAACAGCAGATATACGAGAACAAGTGGAGCTTCTGCAAAAACAGGCAAAGAGAACTGAGTTAGTCATTGATCCCAGAGAGCTTCAACGAAGAGAACAGCTTCTACAAGTAATGGCCAACAACAGTTTACAAAACAAGAAGAGAAAGGGGTTTATTGACTTTGGAAAAGTGGAAGAGATATTAAGCAGCATTGGTTTGAGAACCTTATCAGATTATGATACAGAAATATCCAAGTTAGAGGCTGAAGCTCAGAATCAGGCAGGCACAGGAGGACTAATTGTTGTCTCCAATCTAAACAATCTCATATCTCTGGTTTCTTATTCCAAATCCATGATATTCAGAGATGGAGATAACGATGGAGGTGAAGAAGAGAGTAAGCCACTATCTGCATTTTTTCATAATAAAATACATGATAGTTCTTCATCTTCTCAGTCCACGTCCATTTCACCTAGTATTCCTGATGAATTTCGTTGCCCAATTTCACTTGATTTAGTGAAGGACCCTGTCATTGTATCATCTGGGCACACTTATGATCGAACTTCAATTGCACAATGGATAAACTCTGGGCATCACACTTGTCCCAAAAGTGGGCAAAGGCTAATTCACACTGCTTTAATACCCAACTACGCATTAAAGAGTCTTCTTCAGCAATGGTGCCATGAAAACAACGTCCCAATGAATGAGCCTATGACCAATTCACTTTCCGAGGGAAACAACAACAAGGGCAAGAAGAATATGAATGAGAATGCTATTGATCATATTTCTGCAAACAAAGCAGCTGCAGATGCTGTCAAAATGACAGCAGAATTTCTAGTTGGAAAATTGGCAACTGGTTCAGCTGATACACAAAGGCAAGCTGCATATGAACTTCGGTTACTTGCAAAATCCGGCATGGATAACCGAAGAATCATAGCTGAGGTAGGGGCTATTCCTTTTCTTGTTACACTTCTAGCATCTCAGGATTCAAGAATCCAGGAGCATGTAGTCACGGCCTTGTTCAACCTCTCCATCTATGACAACAACAAGATTTTGATCATGGCAGCTGGGGCAGTTGATAACATAGTAGAAGTACTCGAATCGGGGAAGAACATGGAGGCAAGAGAGAATGCTGCAGCAGCAATGTTTAGCTTGTCAATGGTGGATGATTGCAAAGTACAAATAGGAGCTCGTCCAAGGGCAATACCTGCCTTAGTTGGACTCTTGAAAGAAGGTACTCCTATTGGTAAAAGAGATGCTGCTACTGCACTATTCAATCTTGCAGTTTATAATCCTAACAAAGCATGTGTTGTTAAAGCTGGGGCAGTTCCTGTGTTGGTTGAGTTGTTAATGGATGATAAGGCTGGCATAACAGATGATGCTTTGGCTGTGCTTTCTTTACTACTTGGTTGCTCTCAGGGGCTACAAGAGATAAGGAATAGTAAAGCATTGGTGCCCCTTCTTGTTGATCTTCTGAGATTTGGGTCAGTTAAAGGGAAGGAAAATTCAATAACACTTCTATTAGGATTGTGCAAAGAAGATGGGGAACTTGTTGCAAAACGTCTCTTGGCAAATCCAAGGAGTATTCCTTCTCTTCAAAGCTTGGCAGCTGATGGTTCTTTGAGAGCTAGGAGAAAAGCAGATGCATTGCTTAGGTTGCTAAATAGGTGTTGTTCTCTAGCTTATCATTCTCTCTGA 2073 0.4091 MNDILSAMMITQGLLPSGSLLDSLIHISNELGSMENFPFIQIRNVSSMIRRIKLLSSLFEEIQETDTPLPPSSILCFTELFSVIRRVKVLIQECKDGSSLWGLIQLEFISNQFYVLAKEMGRALDILPLKLLNVTADIREQVELLQKQAKRTELVIDPRELQRREQLLQVMANNSLQNKKRKGFIDFGKVEEILSSIGLRTLSDYDTEISKLEAEAQNQAGTGGLIVVSNLNNLISLVSYSKSMIFRDGDNDGGEEESKPLSAFFHNKIHDSSSSSQSTSISPSIPDEFRCPISLDLVKDPVIVSSGHTYDRTSIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLLQQWCHENNVPMNEPMTNSLSEGNNNKGKKNMNENAIDHISANKAAADAVKMTAEFLVGKLATGSADTQRQAAYELRLLAKSGMDNRRIIAEVGAIPFLVTLLASQDSRIQEHVVTALFNLSIYDNNKILIMAAGAVDNIVEVLESGKNMEARENAAAAMFSLSMVDDCKVQIGARPRAIPALVGLLKEGTPIGKRDAATALFNLAVYNPNKACVVKAGAVPVLVELLMDDKAGITDDALAVLSLLLGCSQGLQEIRNSKALVPLLVDLLRFGSVKGKENSITLLLGLCKEDGELVAKRLLANPRSIPSLQSLAADGSLRARRKADALLRLLNRCCSLAYHSL 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi817g00066 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 566 608 IPR000225 GO:0005515
Gabi817g00066 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 525 567 IPR000225 GO:0005515
Gabi817g00066 690 PANTHER U BOX DOMAIN-CONTAINING 44 682 - -
Gabi817g00066 690 Pfam Armadillo/beta-catenin-like repeat 556 592 IPR000225 GO:0005515
Gabi817g00066 690 Pfam Armadillo/beta-catenin-like repeat 432 469 IPR000225 GO:0005515
Gabi817g00066 690 Gene3D - 394 520 IPR011989 -
Gabi817g00066 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 360 IPR013083 -
Gabi817g00066 690 FunFam RING-type E3 ubiquitin transferase 496 683 - -
Gabi817g00066 690 ProSiteProfiles U-box domain profile. 284 358 IPR003613 GO:0004842|GO:0016567
Gabi817g00066 690 FunFam RING-type E3 ubiquitin transferase 284 358 - -
Gabi817g00066 690 SUPERFAMILY ARM repeat 401 679 IPR016024 -
Gabi817g00066 690 SUPERFAMILY RING/U-box 273 360 - -
Gabi817g00066 690 Gene3D - 521 682 IPR011989 -
Gabi817g00066 690 SMART Ubox_2 288 351 IPR003613 GO:0004842|GO:0016567
Gabi817g00066 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 441 483 IPR000225 GO:0005515
Gabi817g00066 690 CDD RING-Ubox_PUB 286 338 IPR045210 -
Gabi817g00066 690 Pfam U-box domain 285 355 IPR003613 GO:0004842|GO:0016567
Gabi817g00066 690 SMART arm_5 471 512 IPR000225 GO:0005515
Gabi817g00066 690 SMART arm_5 555 595 IPR000225 GO:0005515
Gabi817g00066 690 SMART arm_5 596 637 IPR000225 GO:0005515
Gabi817g00066 690 SMART arm_5 430 470 IPR000225 GO:0005515
Gabi817g00066 690 SMART arm_5 516 554 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi817g00066 Gabi-Chr817 617870 619942 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi817g00066 18 681 U-box Gene Family AT3G46510 38.381 7.57e-131 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi817g00066 - - gmx:100793498 1081.63