Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi817g00063 ATGGACGATGAACACTCATCCCCACCTTCTCACGAGCCTCCTCAACCACCCATCACCACCACCGTTTCAACAACCACTCCCTGCGAAACATCTAACAGTGCAAACAGCAGCAGTAGCAGCAGCACCACCACCGCCAACAACGCCAATAGACGCAAATGCAAAGGCAAAGGTGGCCCTGACAACAACAAATTTAGATACCGCGGTGTGAGACAGCGAAGTTGGGGAAAATGGGTCGCAGAGATCAGAGAGCCACGAAAGCGAACCCGCAAGTGGCTTGGCACCTTCTCCACCGCCGAAGACGCCGCCAGAGCATACGACCGTGCCGCTATTATTCTCCACGGCTCTAGGGCTCAGCTTAACCTTCAACCTTCTGGATCTTCTTCTCAATCTTCCTCCTCTCGTAGCTCTTCATCTTCCTCTTCCACTCAAACCCTTCGACCTTTGCTTCCTCGTCCTTCGGGCTTCGGTTTCACCTTCTCTTCCACCGGTTCCCATCTTCCGATGGTATTCAACGCCGCCGCCTCCACATCCGGGTTCGTGCCTTTTGGGGTTTACCCTTGCGGCGGCGCTAATAACAATAACTTCAACCCACAGGTTCTGTGCCCTATTGATAATAATAATGAAGTGCAGCTTCATCAACATCACTATCATCGTCATCATCCTCAGGAAGTGGTGCAACTACAACAACATCAACAACCCGAATCTGATGTGAGTGTAGCGGGTGGGGTTTTTGCTAATACAAGTTCTATCAGATCAATCCCGTACCAAAACAATAGCCATCAGGATCATCATGCACAACATAATCCTCTGTTGAATCAACAGCAGGATCAGAATTGCATGGTGGAGGGAATGAATTCTTTGGTAGGGTCGGTGGGGTCAAGCTTGTCTTCTCATCATCAGATTAATATAGATGCACCGGTGGATCCGAATCCCTCGTTAGGGGTGGTGGGGACAATGGGTCTTGCATCTCCGTCTATGTGGTCATTGACAATTGAGGAAGATTATCCTGCAGCTAGTCCATGGGATTATAATGATCCTTTCTTTTTTGATTTTTAA 1056 0.4915 MDDEHSSPPSHEPPQPPITTTVSTTTPCETSNSANSSSSSSTTTANNANRRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAARAYDRAAIILHGSRAQLNLQPSGSSSQSSSSRSSSSSSSTQTLRPLLPRPSGFGFTFSSTGSHLPMVFNAAASTSGFVPFGVYPCGGANNNNFNPQVLCPIDNNNEVQLHQHHYHRHHPQEVVQLQQHQQPESDVSVAGGVFANTSSIRSIPYQNNSHQDHHAQHNPLLNQQQDQNCMVEGMNSLVGSVGSSLSSHHQINIDAPVDPNPSLGVVGTMGLASPSMWSLTIEEDYPAASPWDYNDPFFFDF 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi817g00063 351 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Gabi817g00063 351 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Gabi817g00063 351 CDD AP2 65 122 IPR001471 GO:0003700|GO:0006355
Gabi817g00063 351 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Gabi817g00063 351 MobiDBLite consensus disorder prediction 53 67 - -
Gabi817g00063 351 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Gabi817g00063 351 MobiDBLite consensus disorder prediction 17 50 - -
Gabi817g00063 351 MobiDBLite consensus disorder prediction 120 148 - -
Gabi817g00063 351 FunFam Ethylene-responsive transcription factor 2 65 123 - -
Gabi817g00063 351 SUPERFAMILY DNA-binding domain 65 122 IPR016177 GO:0003677
Gabi817g00063 351 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
Gabi817g00063 351 Pfam AP2 domain 65 113 IPR001471 GO:0003700|GO:0006355
Gabi817g00063 351 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 31 305 - -
Gabi817g00063 351 MobiDBLite consensus disorder prediction 1 67 - -
Gabi817g00063 351 MobiDBLite consensus disorder prediction 120 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi817g00063 Gabi-Chr817 560182 561237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi817g00063 50 351 AP2-EREBP Transcription Factor Family AT2G40220 45.312 9.93e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi817g00063 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi817g00063 K09286 - gmx:100301892 248.054