Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi817g00062 ATGTCGAACCAGGACGCTCAGGTATTTAATTGGCACTACGACACAGAGCTGGACGACCAGAACCTTGGAATCCGAGGCCGCAAACTCTTCTTCATCATCGTTCTCTTCTCCATTATCCTCATCTTCTTCGCTCTCTTCCTCTGCGCTCGCTGGATCTGCCGCTACCACGGCCTTCTCCCAACCACGTTCGGCTCAATCCAACCGCACCACGCGCCGCCACATCTGCCACCGCAGGGGCTCGACGCCGAGACGATAAAGAAACTGCCGATTATCTTGCACCATACGGCGGCGTCGGGTCCGAATCGCGCATTGGAGGAAACGGAGTGTTGCATCTGCTTGAGCGCGTTCAGTGATGGCGAGAAGTTGAAGGTTTTGCCTGGATGTGAACATTGCTTCCATTGCGAGTGCGTTGATAAGTGGCTAGCGAATCACTCGAGTTGTCCTCTTTGCAGAGCTTCTCTCAAGTTTGATTCTTCGTTTCCTGAGATTTTGATCCAAGAACCACCCATTAGAATTAATCTTCAATTCTGA 531 0.5179 MSNQDAQVFNWHYDTELDDQNLGIRGRKLFFIIVLFSIILIFFALFLCARWICRYHGLLPTTFGSIQPHHAPPHLPPQGLDAETIKKLPIILHHTAASGPNRALEETECCICLSAFSDGEKLKVLPGCEHCFHCECVDKWLANHSSCPLCRASLKFDSSFPEILIQEPPIRINLQF 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi817g00062 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 156 IPR013083 -
Gabi817g00062 176 SUPERFAMILY RING/U-box 101 158 - -
Gabi817g00062 176 CDD RING-H2_EL5-like 108 151 - -
Gabi817g00062 176 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 158 - -
Gabi817g00062 176 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Gabi817g00062 176 Pfam Ring finger domain 108 151 IPR001841 -
Gabi817g00062 176 SMART ring_2 109 150 IPR001841 -
Gabi817g00062 176 FunFam RING-H2 finger protein ATL66 72 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi817g00062 Gabi-Chr817 539439 539969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi817g00062 2 159 C3H Transcription Factor Family AT3G11110 41.975 5.38e-33 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi817g00062 - - gmx:100803278 235.728