Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi817g00061 ATGACCAGTGCCAACTACAACTCAAACGCCGTCGCCGCCGCCGCCTGCGATCGCAAGGGTTCTTGGAGCCCCCAAGAGGATGCAACACTATTGAGGTTGGTAGCCCAGCACGGCCCTCGCAACTGGTCCGTCATCAGCGGCGGCATCCCTGGCCGCTCCGGCAAGTCTTGCCGTCTCCGGTGGTGCAACCAGCTCAGCCCCGACGTTCAGCACCGGCCATTCACCCCCGCAGAGGACAAGATCATCATCAACGCCCACGCCGTCCACGGAAACAAGTGGGCCACGATCTCCCGTCTCCTCCCCGGCCGCACAGACAACGCCATCAAGAACCACTGGAACTCCACGCTCCGCCGCCGTGGGATGGCGGAGACATCCCCCGCCTCCGCCTCGTCGGAGTCGACCCCTGTGTTCTCTATAAGGAAGCGCTCCCCTGGCGCGTATGATGCCCTTCTCCTCGATACCTACGACGGCTTGCTGGATCCGCGCTACCCTTTCAAGAGGCCGTGCATTGAAGCGGTTTCGACGGAGGATGAAGATTCCGGTGACTGCGACGACGACCCAATTGAAGAAGAGCGAATGGGGGGTCGCGTGACGACGTCGTTGAGCCTGTTTCCGCCAGGGGAGAAGATAGAGGAACAAGAAGAGGAAAAAGAGGAAGAAGTTGAAGCCAATGTTAAGAAGGCGGAACACGCAGACTTGAAGAAGATAATGCAGCGCATGATAGCAGACGAGGTTAGAAATTATATTGAGAGCTTGCGTCTTCGTGACAGCGACATTGCAACTGGGTTGGCTCTTGATCCAACAATCCCAAAGTAA 816 0.5809 MTSANYNSNAVAAAACDRKGSWSPQEDATLLRLVAQHGPRNWSVISGGIPGRSGKSCRLRWCNQLSPDVQHRPFTPAEDKIIINAHAVHGNKWATISRLLPGRTDNAIKNHWNSTLRRRGMAETSPASASSESTPVFSIRKRSPGAYDALLLDTYDGLLDPRYPFKRPCIEAVSTEDEDSGDCDDDPIEEERMGGRVTTSLSLFPPGEKIEEQEEEKEEEVEANVKKAEHADLKKIMQRMIADEVRNYIESLRLRDSDIATGLALDPTIPK 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi817g00061 271 CDD SANT 73 116 IPR001005 -
Gabi817g00061 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Gabi817g00061 271 SMART sant 18 67 IPR001005 -
Gabi817g00061 271 SMART sant 70 118 IPR001005 -
Gabi817g00061 271 SUPERFAMILY Homeodomain-like 18 112 IPR009057 -
Gabi817g00061 271 ProSiteProfiles Myb-like domain profile. 18 65 IPR001005 -
Gabi817g00061 271 Coils Coil 211 231 - -
Gabi817g00061 271 Gene3D - 19 70 - -
Gabi817g00061 271 Gene3D - 73 119 - -
Gabi817g00061 271 PANTHER MYB PROTEIN-RELATED 19 181 - -
Gabi817g00061 271 FunFam MYB transcription factor 19 70 - -
Gabi817g00061 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 65 IPR017930 -
Gabi817g00061 271 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Gabi817g00061 271 CDD SANT 21 63 IPR001005 -
Gabi817g00061 271 FunFam Transcription factor MYB44 73 119 - -
Gabi817g00061 271 Pfam Myb-like DNA-binding domain 73 115 IPR001005 -
Gabi817g00061 271 Pfam Myb-like DNA-binding domain 19 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi817g00061 Gabi-Chr817 519918 520954 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi817g00061 19 253 MYB Transcription Factor Family AT5G67300 39.568 3.80e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi817g00061 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi817g00061 - - cam:101514420 279.256