Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi817g00060 ATGGAAAATTACTACTATTCTGGCTGGCCTCTGGGCACCAACTTGGTTCAATTAAACTATGCATCAAACAGTGATCAATCTCCTTTTTCAGTCTCAACGCAAACACTGCCTCTTGCCTCTGACTCTGCCTCTCTTCAATTTGGCAAGTTCCCTTCGTGGCCTGTACCCATTGAAGGGGTCGCAGAACAAAGAGCAACAAGTGCTTCCAAGAGCCATAGCCAAGCAGAGAAAAGGCGCAGGGACAGGATCAATTTACAGCTTGCAACTCTCAGAAAAATGATTCCCAAGTCTGATAAGATGGACAAGGCAGCTTTACTAGGGAGTGTCATAGACCATGTCAAAGATCTAAAGCGAAAAGCCATGGATGTAAGTAAAGCCATTACTGTTCCAACTGAAATTGATGAAGTAACAATTGACTATAACCCAGCTCAAGATGAAAGCTATACCAAAGCAAACATGTTTAAGGAAAATATGGTCATCAAAGCTTCAGTTTGCTGCGATGATAGACCAGAACTGTTCCCCGAGCTGATCCAAGTCCTCAAAGGACTGAGACTCAAAGCAGTTAAAGCTGACATAGCCAGTGTTCGTGGCAGAACTAAAAGCATATTGGTGCTTTGCTCGAGGGATAGTGAAGAGGGTAGTGTTTGCCTTGGCACTCTCAAACAGTCCCTTAAATCAGCTGTGAACAAAATCGCTTCATTATCCGTGGCACCAAATTATCCCACAAGAAGTAAGAGGCAGAGGTTCTTCTTGCCTTCTCCTTGCGTATAA 771 0.4384 MENYYYSGWPLGTNLVQLNYASNSDQSPFSVSTQTLPLASDSASLQFGKFPSWPVPIEGVAEQRATSASKSHSQAEKRRRDRINLQLATLRKMIPKSDKMDKAALLGSVIDHVKDLKRKAMDVSKAITVPTEIDEVTIDYNPAQDESYTKANMFKENMVIKASVCCDDRPELFPELIQVLKGLRLKAVKADIASVRGRTKSILVLCSRDSEEGSVCLGTLKQSLKSAVNKIASLSVAPNYPTRSKRQRFFLPSPCV 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi817g00060 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 119 IPR036638 GO:0046983
Gabi817g00060 256 Gene3D - 60 125 IPR036638 GO:0046983
Gabi817g00060 256 PANTHER TRANSCRIPTION FACTOR BHLH30 49 250 IPR045847 GO:0003700|GO:0006355
Gabi817g00060 256 MobiDBLite consensus disorder prediction 61 80 - -
Gabi817g00060 256 Pfam Helix-loop-helix DNA-binding domain 70 116 IPR011598 GO:0046983
Gabi817g00060 256 CDD bHLH_AtAIG1_like 62 139 - -
Gabi817g00060 256 SMART finulus 73 122 IPR011598 GO:0046983
Gabi817g00060 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 116 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi817g00060 Gabi-Chr817 509798 511749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi817g00060 1 253 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 40.154 3.24e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi817g00060 HLH 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi817g00060 - - gmx:100306102 379.793