Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi817g00042 ATGTGCAGTAGTTCAAAAAGTAAACTTTCTTCCTCGAACCACGTCATGGAGAGTGAGCTTCAGAAACAGAATCATGATGGTCTCCATAACTTCCCAGTTTTGCTTGAATTGTCTGCATCTGATGATTTTGAAGCTTTCAAAAGAGAAGTTGATGAGAAAGGTTTGGATGTCAACGATGCTGGTTTTTGGTACGGTAGAAGAATTGGATCAAAGAAGATGGGATCAGAAAAGAGGACCCCCCTCATGATTGCTTCTTTGTTTGGAAGCACCAGGGTGCTCAAGTATATTATTGAGACAGGAAGGGTTGATGTGAACAGGGCCTGTGGTACTGATAGGGCCACTGCTCTTCATTGTGCTGTTGCTGGGGGCTCTGATTCCTCACTTGAAATTGTTAGGCTCTTGCTTGATGCTGGAGCAGATGCTGATTGCCTTGATGCTAGTGGAAATAATCCTGTTAATCTGATTGCTCCTTCCTTTAATCTTTTGTCCAAATCACGAAGGAAGGCCATGGAGTTGTTTCTCAAAGGCGGCGAAAGAGATCACCAGGAGATGGAGCAACAGATGTTCTCAGTTCCTTTCTCATCAAAAGAAGGTATTGAGAAAAAAGAAAAAGAAGGAAGTGATAAGAAAGAATATCCTGTTGATATATCGTTGCCTGACATAAACAACGGTATATATGGAACAGACGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCATGCTCAAGGGCTTACTCTCACGACTGGACTGAGTGTCCATTTGTTCATCCAGGGGAGAATGCAAGGAGGAGAGACCCACGGAAATACCCTTATAGCTGTGTTCCTTGCCCCGAGTTTCGCAAAGGGACATGCCAGAAGGGGGATTCCTGTGAGTATGCACATGGTGTTTTTGAGTCCTGGCTACACCCTGCACAATACAGAACAAGGCTTTGCAAAGATGAGACTGGCTGCAATAGAAAAGTCTGCTTCTTTGCTCACAAACCCGAGGAGTTACGCCCTGTGTATGCTTCCACTGGGTCAGCTATGCCTTCACCAAAATCTTATTCAGCAAGTGGACTTGACATGACGGCAATGAGTCCATTGGCTCTCAGTTCCTCATCTATGCCTATGCCAACTGTTTCAACACCGCCCATGTCTCCCTTGGCAGCTTCTTCATCTCCCAAGAATGGAAACTTGTGGCAGAACAAAATAAACCTCACTCCACCATCTTTGCAGCTCCCTGGTAGCCGGCTGAAGGCTGCGTTGAGTGCCAGGGATTTTGATCTGGAGATGGAACTGCTTGGTCTAGAAAGTCCTGCGCGTCAACACCAACAACAGCAGCAGCAGCAGCAACAACAACAACAACTGATAGAAGAGATTGCCAGGATCTCTTCCCCATCATTCCGGAGCAAGGAATTCAATAGGATTGGTGATTTGAATCCAACTAACCTTGATGACCTGTTAGCATCTGCTGACCCTTCTGTATTAGCTCAATTACATGGACTTTCTGTGCAACCTTCGACCCCTACACAGTTGCAATCGATGCGCCAAAACATGAACCACCTCAGAGCAAGTTATCCATCCAACATTCCTTCCTCTCCAGTGAGAAAACCCTCAGGATTTGGGTTTGACTCATCAGCTGCTGTGGCAGCTGCAGTGATGAATTCCAGGTCTGCTGCATTTGCAAAGCGAAGCCAAAGTTTTATTGATCGTGGAGCTACAAATCACCACCACCTTGGTCTGTCTTCACCTTCCAACCCTACTTGTAGGGTGTCCTCTGCCCTTTCAGATTGGAGTTCCCCCTCTGGGAAACTGGATTGGGGCGTAAATGGAGACGAGCTGAACAAGCTGAGGAAATCTGCTTCTTTTGGGTTCAGAAATAATGGGGTTAACCCAAATGCACCCTCCTTTGCACATTCAGAACATGTTGAGCCTGATGTCTCTTGGGTTCATTCATTGGTTAAAGATGTTCCCTCTGAGAGTTCTGAGATGCAACATTATGATCTCAGTAAAGAGATGCTTCCACCCTGGGTGGAGCAGCTGTATATAGAGCAGGAGCAGATGGTAGCTTGA 2052 0.46 MCSSSKSKLSSSNHVMESELQKQNHDGLHNFPVLLELSASDDFEAFKREVDEKGLDVNDAGFWYGRRIGSKKMGSEKRTPLMIASLFGSTRVLKYIIETGRVDVNRACGTDRATALHCAVAGGSDSSLEIVRLLLDAGADADCLDASGNNPVNLIAPSFNLLSKSRRKAMELFLKGGERDHQEMEQQMFSVPFSSKEGIEKKEKEGSDKKEYPVDISLPDINNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHKPEELRPVYASTGSAMPSPKSYSASGLDMTAMSPLALSSSSMPMPTVSTPPMSPLAASSSPKNGNLWQNKINLTPPSLQLPGSRLKAALSARDFDLEMELLGLESPARQHQQQQQQQQQQQQLIEEIARISSPSFRSKEFNRIGDLNPTNLDDLLASADPSVLAQLHGLSVQPSTPTQLQSMRQNMNHLRASYPSNIPSSPVRKPSGFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGATNHHHLGLSSPSNPTCRVSSALSDWSSPSGKLDWGVNGDELNKLRKSASFGFRNNGVNPNAPSFAHSEHVEPDVSWVHSLVKDVPSESSEMQHYDLSKEMLPPWVEQLYIEQEQMVA 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi817g00042 683 PANTHER UNKEMPT FAMILY MEMBER 36 650 IPR045234 -
Gabi817g00042 683 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Gabi817g00042 683 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Gabi817g00042 683 MobiDBLite consensus disorder prediction 1 22 - -
Gabi817g00042 683 Gene3D - 3 191 IPR036770 -
Gabi817g00042 683 SMART ANK_2a 76 106 IPR002110 GO:0005515
Gabi817g00042 683 SMART ANK_2a 111 143 IPR002110 GO:0005515
Gabi817g00042 683 SUPERFAMILY Ankyrin repeat 30 165 IPR036770 -
Gabi817g00042 683 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872
Gabi817g00042 683 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Gabi817g00042 683 ProSiteProfiles Ankyrin repeat region circular profile. 111 145 - -
Gabi817g00042 683 Gene3D - 272 333 - -
Gabi817g00042 683 MobiDBLite consensus disorder prediction 367 387 - -
Gabi817g00042 683 Pfam Ankyrin repeats (3 copies) 72 142 IPR002110 GO:0005515
Gabi817g00042 683 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
Gabi817g00042 683 MobiDBLite consensus disorder prediction 1 18 - -
Gabi817g00042 683 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi817g00042 Gabi-Chr817 392268 395298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi817g00042 29 678 C2H2 Transcription Factor Family AT5G12850 39.607 2.84e-141 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi817g00042 Ank_2 7e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi817g00042 - - gmx:100783376 1060.83