Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi817g00017 TTGGGATTGGGCCTTGGTGGATTGGGCTTTCATCAGCAACTTAAGTGGCCAACCAAACTCTTCTTTGCTTGTCCCTCTTATAAACTTGACTGGGCTTGGGTTTGTTGGGTTGGGTCTTATCATATTCCTACTTCTATTGGCAATCTTACTATGTTATCTGAAGTTTATCTAAGCGCCAATAAATTTGAAGGAAGCATTCCACTTACCCTTAGATATTGCACTCAGATGCAGTCATTTAGTGTTTCTGACAACAACTTAAGTGGTGATATACCTAATCAAACATTTGGCCATCTAGACGGTTTAATAAATCTTGACTTATCCAACAACTCTTTCACTGGTTCTATTCCTTCAGAGTTTGGAAACTTCAAGCACCTTTCCATATTATATCTATCCGCAAATAAGTTGTCCGGTGAAATTCCCATTGAACTTGGCGTTTGTTTGGCATTAGCTGAGCTCGTGCTGGGGAGAAATTTCTTCAGTGGAAGTATACCTTCTTTCTTGGGCTCTTTAATATCCCTCGAAATCTTAGACCTTTCTCACAATAACTTCTCAAGCACAATCCCCCGTGAACTAGAAAAGCTTATATTGTTGAATACTTTGGACTTGTCTTTTAACCATCTTTATGGTGAGGTTCCCGTAGGAGGTGTCTTTAAAAACATCACAGCATTTTCACTTATTGGAAATAAGGATCTCTGTGGGGGCATACCTCAATTGAAGCTGGCTGCATGCTCTAGGTCGCCCTCAAAGAAACACAATAGGTCTCTTAAAAATAAAGTTATCCTCATCATTGTAATTGGCGGGGTTTTGATCTCTTTCATTGGATCTATTAGTATCTTCTATCTCAGGAAAAAGCCCAAAAAGTTATGTTCTTCATTATCTCTGCAAAATAAGTACTTGGGGGTGTCGTATGGACAGTTACATGAAGCAACCGACGGATTTTCTTCATCCAATTTAGTGGGCACGGGAAGCTTTGGTTCTGTATACAAAGGAATTCTTCTCCATTTTGAAAGACCGATTGCTGTTAAGGTGTTGAATCTTGAAAGACGTGGGGCATCAAAGAGTTTCAAGGCTGAATGCAAAGCTCTGGGAAAGATCAAGCACCCAAATCTTCTCAATATCCTGACCTATTGTTCAAGTGTTGATTATAATGGTGAAGATTTCAAGGCTATAGTTTTTGAGTTCATGCCTAATGGAAGTCTAGACAGCTTGTTGCACAGCAATGAACATCGCGAGTCTAGAAATATAAATCTCAACCTTTTACAAAGGTTAAATATTGCTCTAGACGTAGCCCTCGCATTGGAATATCTTCATCGTGATTCCGAGCAAGCTGTAATTCACTGTGATATAAAGCCAAGCAACGTTCTTCTTGACGATGACATTGTTGCCCACTTGGGAGACTTTGGGTTAGCTAGGCTACTTCATGGGGACATGGGGCGAGCCAATAGAGATCAAGTTAGCTCCTCTGCAGTTAAGGGAACCATTGGATATATTCCCCTAGAGTATGGTGCAGGTGGCCCAGTATCACCACAAGGAGATATCTACAGCTATGGGATTCTTCTTTTGGAGATGCTCACCGGAATGAAACCAACAGATAGCATGTTCGGTGAGGGTCTAAGCCTACACAATTTCTGCAAGAGAGCAATTCCAGAAGGAATTATTGAGATAGTGGATTCATTTTTGGTTATGTCATTTGTTGAAGAACGGAGAGACGTGATGCAACAAAAAAATATAGAAGACAACATTAGGGAGTGTCTGGTGTCTTTTGCTAGGATTGGGGTTGCATGTTCTGCCGAATTCCCCGCTCAGAGAATGTGTATAAAAGATGTTATAATGGAGTTGCTTGCAATTAAACAGAAGCTGCCCCGCTAG 1869 0.4077 LGLGLGGLGFHQQLKWPTKLFFACPSYKLDWAWVCWVGSYHIPTSIGNLTMLSEVYLSANKFEGSIPLTLRYCTQMQSFSVSDNNLSGDIPNQTFGHLDGLINLDLSNNSFTGSIPSEFGNFKHLSILYLSANKLSGEIPIELGVCLALAELVLGRNFFSGSIPSFLGSLISLEILDLSHNNFSSTIPRELEKLILLNTLDLSFNHLYGEVPVGGVFKNITAFSLIGNKDLCGGIPQLKLAACSRSPSKKHNRSLKNKVILIIVIGGVLISFIGSISIFYLRKKPKKLCSSLSLQNKYLGVSYGQLHEATDGFSSSNLVGTGSFGSVYKGILLHFERPIAVKVLNLERRGASKSFKAECKALGKIKHPNLLNILTYCSSVDYNGEDFKAIVFEFMPNGSLDSLLHSNEHRESRNINLNLLQRLNIALDVALALEYLHRDSEQAVIHCDIKPSNVLLDDDIVAHLGDFGLARLLHGDMGRANRDQVSSSAVKGTIGYIPLEYGAGGPVSPQGDIYSYGILLLEMLTGMKPTDSMFGEGLSLHNFCKRAIPEGIIEIVDSFLVMSFVEERRDVMQQKNIEDNIRECLVSFARIGVACSAEFPAQRMCIKDVIMELLAIKQKLPR 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi817g00017 622 PRINTS Leucine-rich repeat signature 170 183 - -
Gabi817g00017 622 PRINTS Leucine-rich repeat signature 101 114 - -
Gabi817g00017 622 Gene3D Transferase(Phosphotransferase) domain 1 395 621 - -
Gabi817g00017 622 Pfam Leucine rich repeat 76 135 IPR001611 GO:0005515
Gabi817g00017 622 Pfam Leucine rich repeat 149 207 IPR001611 GO:0005515
Gabi817g00017 622 SUPERFAMILY L domain-like 40 233 - -
Gabi817g00017 622 Gene3D Phosphorylase Kinase; domain 1 276 394 - -
Gabi817g00017 622 SUPERFAMILY Protein kinase-like (PK-like) 289 613 IPR011009 -
Gabi817g00017 622 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 43 139 - -
Gabi817g00017 622 FunFam Leucine-rich repeat receptor protein kinase EMS1 140 238 - -
Gabi817g00017 622 ProSiteProfiles Leucine-rich repeat profile. 172 195 IPR001611 GO:0005515
Gabi817g00017 622 FunFam LRR receptor-like serine/threonine-protein kinase EFR 284 394 - -
Gabi817g00017 622 ProSitePatterns Protein kinases ATP-binding region signature. 319 342 IPR017441 GO:0005524
Gabi817g00017 622 Pfam Protein kinase domain 315 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi817g00017 622 ProSiteProfiles Protein kinase domain profile. 313 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi817g00017 622 Gene3D Ribonuclease Inhibitor 36 252 IPR032675 -
Gabi817g00017 622 SMART serkin_6 313 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi817g00017 622 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 395 622 - -
Gabi817g00017 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Gabi817g00017 622 PANTHER OS04G0122200 PROTEIN 41 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi817g00017 Gabi-Chr817 182977 185125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi817g00017 42 619 Receptor kinase-like Gene Family AT3G47570 45.593 7.74e-162 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi817g00017 Pkinase 2.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi817g00017 - - gmx:100776429 814.298