Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi817g00013 ATGCCTTTGAAGAAATCAAGAATATCCAGTACTCTATCAGATTCCATGCCTGCCATGAAAAAGAATTCTGAGCAGGATCGTTTTGGATCTGTATTCAACAAGTTGGTCATGGAGCTTGGGGAACCTGTTGACTTTGAACTTCCAGATTGGTTTAATAAGTCGAAGTCAAAGCCAACGTACACCTATATAAAACGCAATATATATGTCACTAAGAAGGTCAAGAGACGGTTTGATGATGATGGCATTTTCTGTTCCTGTACTCCTTCAACTGGATCTACTAGCGTATGTGGTAGAGATTGCCACTGTGGGATGCTTCTGTCTAGCTGTTCTTCAGGCTGTAAATGTGGGAGCTCCTGTCTTAACAAACCATTTCAGCATCGTCCAGCGAAAAAGATGAAATTGGTTAAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATCAAGCTTGGGGAATTTGTTATTGAATATGTTGGAGAAGTCATCAATGACCAAACATGTGAAGATAGGCTTTGGGATATGAAACGTCGTGGGGAAACTAACTTTTACTTATGTGAAATCAATCGAGATATGGTGATAGATGCTACATATAAGGGAAACAAATCAAGATATATCAATCATAGTTGCTGCCCCAATACTGAGATGCAGAAATGGATAATTGATGGTGAAACCAGAATTGGCATATTTGCAACTCGTGACATACAAAAGGGCGAGCATCTGACTTATGATTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGTCGAGTGTAGGCGTAAGCTGGGTGTGCGACCTACCAAGCCTAAGTCTTCAGATGCTGCGTTAAAATTAGTTGCATATCAGGTTTATCAGAATGGAGGTTTGCAAATTGGAAATTCTCGTGTTGTTGACCAATCAAAGTGCTTACACAATTGCATTGGTGAAGTTATTAGGTTAAAACAACATGGAAATGTGAGGTTTGGGATTATTAAATGGTTTGATAAATATTCTCAAAAACACTCAATCATGTTTGAGGATGGTTGTGTTGAAATTTATGATATGTCAAAAGAAGACTGGGAACTTGTGAGATTGTGA 1095 0.3918 MPLKKSRISSTLSDSMPAMKKNSEQDRFGSVFNKLVMELGEPVDFELPDWFNKSKSKPTYTYIKRNIYVTKKVKRRFDDDGIFCSCTPSTGSTSVCGRDCHCGMLLSSCSSGCKCGSSCLNKPFQHRPAKKMKLVKTEKCGSGIVADEDIKLGEFVIEYVGEVINDQTCEDRLWDMKRRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIQKGEHLTYDYQFVQFGADQDCHCGAVECRRKLGVRPTKPKSSDAALKLVAYQVYQNGGLQIGNSRVVDQSKCLHNCIGEVIRLKQHGNVRFGIIKWFDKYSQKHSIMFEDGCVEIYDMSKEDWELVRL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi817g00013 364 SMART PostSET_3 253 269 IPR003616 -
Gabi817g00013 364 ProSiteProfiles SET domain profile. 130 247 IPR001214 GO:0005515
Gabi817g00013 364 ProSiteProfiles AWS domain profile. 79 128 IPR006560 GO:0005634|GO:0042054
Gabi817g00013 364 MobiDBLite consensus disorder prediction 1 22 - -
Gabi817g00013 364 Pfam SET domain 141 246 IPR001214 GO:0005515
Gabi817g00013 364 SUPERFAMILY SET domain 52 265 IPR046341 -
Gabi817g00013 364 ProSiteProfiles Post-SET domain profile. 253 269 IPR003616 -
Gabi817g00013 364 MobiDBLite consensus disorder prediction 1 19 - -
Gabi817g00013 364 Gene3D SET domain 42 284 IPR046341 -
Gabi817g00013 364 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 43 306 IPR025787 -
Gabi817g00013 364 SMART set_7 130 253 IPR001214 GO:0005515
Gabi817g00013 364 PANTHER SET DOMAIN PROTEINS 43 285 - -
Gabi817g00013 364 FunFam Histone-lysine N-methyltransferase 45 284 - -
Gabi817g00013 364 CDD SET_ASHR3-like 131 269 - -
Gabi817g00013 364 SMART shorttest3 79 129 IPR006560 GO:0005634|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi817g00013 Gabi-Chr817 127701 141097 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi817g00013 103 265 C2H2 Transcription Factor Family AT2G23740 34.066 1.80e-22 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi817g00013 SET 1.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi817g00013 - - gmx:100808183 649.432