Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi817g00012 ATGGAGCTTGGGGAACCTGTTGACTTTGAACTTCCAGATTGGTTTAATAAGTCGAAGTCAAAGCCAACGTACACCTATATAAAACGCAATATATATGTCACTAAGAAGGTCAAGAGACGGTTTGATGATGATGGCATTTTCTGTTCCTGTACTCCTTCAACTGGATCTACTAGCGTATGTGGTAGAGATTGCCACTGTGGGATGCTTCTGTCTAGCTGTTCTTCAGGCTGTAAATGTGGGAGCTCCTGTCTTAACAAACCATTTCAGCATCGTCCAGCGAAAAAGATGAAATTGGTTAAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATCAAGCTTGGGGAATTTGTTATTGAATATGTTGGAGAAGTCATCAATGACCAAACATGTGAAGATAGGCTTTGGGATATGAAACGTCGTGGGGAAACTAACTTTTACTTATGTGAAATCAATCGAGATATGGTGATAGATGCTACATATAAGGGAAACAAATCAAGATATATCAATCATAGTTGCTGCCCCAATACTGAGATGCAGAAATGGATAATTGATGGTGAAACCAGAATTGGCATATTTGCAACTCGTGACATACAAAAGGGCGAGCATCTGACTTATGATTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGTCGAGTGTAGGCGTAAGCTGGGTGTGCGACCTACCAAGCCTAAGTCTTCAGATGCTGCGTTAAAATTAGTTGCATATCAGGTTTATCAGAATGGAGGTTTGCAAATTGGAAATTCTCGTGTTGTTGACCAATCAAAGTGCTTACACAATTGCATTGGTGAAGTTATTAGGTTAAAACAACATGGAAATGTGAGGTTTGGGATTATTAAATGGTTTGATAAATATTCTCAAAAACACTCAATCATGTTTGAGGATGGTTGTGTTGAAATTTATGATATGTCAAAAGAAGACTGGGAACTTGTGAGATTGTGA 987 0.3921 MELGEPVDFELPDWFNKSKSKPTYTYIKRNIYVTKKVKRRFDDDGIFCSCTPSTGSTSVCGRDCHCGMLLSSCSSGCKCGSSCLNKPFQHRPAKKMKLVKTEKCGSGIVADEDIKLGEFVIEYVGEVINDQTCEDRLWDMKRRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIQKGEHLTYDYQFVQFGADQDCHCGAVECRRKLGVRPTKPKSSDAALKLVAYQVYQNGGLQIGNSRVVDQSKCLHNCIGEVIRLKQHGNVRFGIIKWFDKYSQKHSIMFEDGCVEIYDMSKEDWELVRL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi817g00012 328 Pfam SET domain 105 210 IPR001214 GO:0005515
Gabi817g00012 328 SMART PostSET_3 217 233 IPR003616 -
Gabi817g00012 328 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 7 270 IPR025787 -
Gabi817g00012 328 SMART set_7 94 217 IPR001214 GO:0005515
Gabi817g00012 328 SUPERFAMILY SET domain 15 229 IPR046341 -
Gabi817g00012 328 Gene3D SET domain 8 248 IPR046341 -
Gabi817g00012 328 ProSiteProfiles SET domain profile. 94 211 IPR001214 GO:0005515
Gabi817g00012 328 ProSiteProfiles Post-SET domain profile. 217 233 IPR003616 -
Gabi817g00012 328 CDD SET_ASHR3-like 95 233 - -
Gabi817g00012 328 PANTHER SET DOMAIN PROTEINS 8 249 - -
Gabi817g00012 328 SMART shorttest3 43 93 IPR006560 GO:0005634|GO:0042054
Gabi817g00012 328 FunFam Histone-lysine N-methyltransferase 9 248 - -
Gabi817g00012 328 ProSiteProfiles AWS domain profile. 43 92 IPR006560 GO:0005634|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi817g00012 Gabi-Chr817 127701 141097 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi817g00012 67 229 C2H2 Transcription Factor Family AT2G23740 34.066 1.86e-22 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi817g00012 SET 1.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi817g00012 - - gmx:100808183 617.846