Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi813g00006 ATGAGCATAGCACCTGGATGGATGATCCCGTTCAAATTGAAGAATGTGTTGAGGCCTATTTTGAGAAATTTTTTTGTGGAAAGTGATGAAAGTGTTGAGGAATTCCCTATTTGGGGTGGTTTTCCTACCATTGATCGTGGCCTTGAGAACCTAGAGGCTCTTCCTACTTCTCTGGAGATCAAGCAAGCCATTTTCATTATGGGAAAGCTAAAATCCTCAGACTTGAAGTTTGAGTATGAGGGTGAATTGAGGGATGTATGGTGTTTAGTAGTGAGTGATCTGGGTCACAAATGCTACTTTGTTTGGATTAGAACCTGTCAGCACAGTATCGAGGCTATTCTGCTCAACCCTTATGGGTATGAGCTAAACCTTTCAAGCTTGGGTGTAGGTTACCCGAACCATACAAGGAAACAGTGGGTACAATGTGATAAATGCCAAAGATGGCAACATCAAATATGTGCACTCTTTAACAATAAAAGAGAGTTGGATTGCGGAGCTGAGTACATATGTCCTATATGCCGCTTAAAGGAAATTGAAAATGGAATGCATGTACCCATACCAAAGACTGCTATTTTTTGTGCCAAGGACTTGCCAAGCACCATGCTCAGCGAGCACCTTGAGAAAAGACTTTTTAGTCGTCTCATGCAAGAGAGAGAAGATAGGGCAAAAGTTGAAGGGAATGAAAATTTTGATGAGGTTTTAGCAGCAGAACATCTAACTGTTAGAGTAGTATTATCTGTTGACAAACAATTGAAAGTGAAGAACGAGTTTCAGGACATCTTCTTGGAGGAAAGTTATCCTACTGAGTTCCCTTATAGATCAAAAGTTATTCTTTTGTTTCAGCAGATTGAAGGAGTGGATGTATGCCTTTTTGGAATGTATGTCCAGGAGTTTGGCTCAGAATGTGGCTACCCTAATCAGCGTTGTGTATATATTTCATATCTTGATTCTATTAAGTATTTTAGGCCTGAAAGAGCGGCTATGAGTGGAGAAGCTCTTCGAACCTTCGTTTACCATGAGTTATTGATTGGATACCTTGATTTTTGCAAGAAACAAGGCTTCACAACTTGCTACATATGGGCCTGTCCTCCGTCGAAAGGGGGAGATTATTTACTATATCGTCATCCTGGCAATCAAAAGACTCCGAAGAATGATAAATTACGGCACTGGTATCATTCAATGCTAAGAAAGGCTGCTGATGAAAATATTGTTGTTGGTTTAAGCAACATATATGATCGTTTCTTTGTTCCTAGTGAAAAATGTGACTTCAAGGTAACTACTGCTCATTTGCCATACTTTGATGGAAACTGTTGGTCTGGTGCTGCTATGGATCATGCCAGGAACATTGAACAAAAAAGTGGAGGAGACTATGAAAGGGAGTTGAAGAAAGTGACAAAAAGAGCTTTAAAGGCCATGGGATATGTAAATCCTTCAAAAGGCACTGCCAAAGACATTCTAGTGATGCAGAAACTGGGCCAAACTATATTGCCTGTCAAGGAAGACTTCATCGTAGTTCACCTTCAGTATGCATGCATGCACTGCCATGAAGTGATAGTGTCTGGGAGGAGATGGTTTTGCACTGAATGCAAGAAATTTCAGGAGTGTGAAAGATGCCATACTGCTGACTCGCACATTTCACTTAGTGGCAAGAGGCATAAACTTTGTCAGGTCCTCGTGGATGATATCCCTTCTGATACTAAGGAGAATGATATGATCCTTAATAATGAATTATTTGAGATTAGGCATAACTTTTTGAGTTTCTGCCAAAAGAATCACTTTCAGTTTGACACACTCCGCCATGCCAAGTATTCCTCAATGATGATCCACCATCATCTAAATAATCTGCTTGCTGTTCCATGTAGCATTTGCTCTAACAATAATGTATTCCAACAAAGCTGGAAATGTGAGATTTGCCGTGAGTTCACTGTCTGCTCTGCATGCTATGAGAAGAGAGGTGCTAATTTCCATACACACAAGTTGAGTCAAACTTGTTCAACAGTAGAACATCGGTCAGAGAATCAAGAGTTAAAGCAGGATCCTATGCAGGAATTTCTACAAGTTTTATTGCATGCATCTCAATGTCGCCCAACTAAAGCTCAGCCCTGCTCTTATCCAAAATGCATTAAAATTAAAAAATTGTTCTCTCATGCCAGTAAGTGCACTATTAAAGCTGGTGGGGGCTGCCAGTATTGTAAGAAGGCATGGTTGGGACTAGCTGCACACTCGAAGAATTGTAGGGACTCAGAATGTCGCGTCCCACGTTGCAAGGATCTGAAGAAGCATGCAGAATGGATAGAAATGCAATCTGAATCTCAACGTAGAGCTGCAATTGTTGAAAGCAAAAGTGCATTCGCTAATCAATAA 2364 0.4057 MSIAPGWMIPFKLKNVLRPILRNFFVESDESVEEFPIWGGFPTIDRGLENLEALPTSLEIKQAIFIMGKLKSSDLKFEYEGELRDVWCLVVSDLGHKCYFVWIRTCQHSIEAILLNPYGYELNLSSLGVGYPNHTRKQWVQCDKCQRWQHQICALFNNKRELDCGAEYICPICRLKEIENGMHVPIPKTAIFCAKDLPSTMLSEHLEKRLFSRLMQEREDRAKVEGNENFDEVLAAEHLTVRVVLSVDKQLKVKNEFQDIFLEESYPTEFPYRSKVILLFQQIEGVDVCLFGMYVQEFGSECGYPNQRCVYISYLDSIKYFRPERAAMSGEALRTFVYHELLIGYLDFCKKQGFTTCYIWACPPSKGGDYLLYRHPGNQKTPKNDKLRHWYHSMLRKAADENIVVGLSNIYDRFFVPSEKCDFKVTTAHLPYFDGNCWSGAAMDHARNIEQKSGGDYERELKKVTKRALKAMGYVNPSKGTAKDILVMQKLGQTILPVKEDFIVVHLQYACMHCHEVIVSGRRWFCTECKKFQECERCHTADSHISLSGKRHKLCQVLVDDIPSDTKENDMILNNELFEIRHNFLSFCQKNHFQFDTLRHAKYSSMMIHHHLNNLLAVPCSICSNNNVFQQSWKCEICREFTVCSACYEKRGANFHTHKLSQTCSTVEHRSENQELKQDPMQEFLQVLLHASQCRPTKAQPCSYPKCIKIKKLFSHASKCTIKAGGGCQYCKKAWLGLAAHSKNCRDSECRVPRCKDLKKHAEWIEMQSESQRRAAIVESKSAFANQ 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi813g00006 787 PANTHER CBP/P300-RELATED 135 780 IPR013178 GO:0004402|GO:0006355|GO:0016573
Gabi813g00006 787 Gene3D - 614 668 IPR043145 -
Gabi813g00006 787 SUPERFAMILY FYVE/PHD zinc finger 133 176 IPR011011 -
Gabi813g00006 787 Pfam TAZ zinc finger 681 755 IPR000197 -
Gabi813g00006 787 SUPERFAMILY RING/U-box 486 553 - -
Gabi813g00006 787 SUPERFAMILY TAZ domain 676 759 IPR035898 -
Gabi813g00006 787 Gene3D - 504 557 IPR043145 -
Gabi813g00006 787 Pfam Histone acetylation protein 235 402 IPR013178 GO:0004402|GO:0006355|GO:0016573
Gabi813g00006 787 ProSiteProfiles Zinc finger ZZ-type profile. 506 565 IPR000433 GO:0008270
Gabi813g00006 787 SUPERFAMILY RING/U-box 610 661 - -
Gabi813g00006 787 SMART TAZ_2 675 756 IPR000197 -
Gabi813g00006 787 Gene3D TAZ domain 669 787 IPR035898 -
Gabi813g00006 787 SMART zz_5 505 546 IPR000433 GO:0008270
Gabi813g00006 787 SMART zz_5 608 660 IPR000433 GO:0008270
Gabi813g00006 787 SMART KAT11_2 227 518 IPR013178 GO:0004402|GO:0006355|GO:0016573
Gabi813g00006 787 ProSitePatterns Zinc finger ZZ-type signature. 620 647 IPR000433 GO:0008270
Gabi813g00006 787 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 191 617 IPR031162 GO:0004402
Gabi813g00006 787 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 180 IPR013083 -
Gabi813g00006 787 ProSiteProfiles Zinc finger TAZ-type profile. 674 758 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi813g00006 Gabi-Chr813 81772 96639 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Gabi813g00006 HAT_KAT11 4.3e-28 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi813g00006 K04498 - aprc:113866525 999.964