Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi813g00005 ATGGAAGATTTAAACAGTTGGTTATCCTTCTACATGAATGAGAGTGCTAACCATGAACATGCCATTCGAAGATTTTGCCCTGCAAGAATGGAGCAAGACCAAAGAGAAGAGTGCCAAGATCAAGAAGCAGTAATTAATGAAATTGAGTTATGTTCTTCTGATTCTACCAGCACTCCTTGTTTGGCTTCTTCAGAGGTTGATGATTTTGTTGACAGCTTCATCAACATGGATCAGTACAAGTATGAAAATGAAGATCAAGAGTCCCTAGAGAAGCATCAAAGTTTTGATCACTTTGTGGTGAATGATGAAGATGGGATTGATACATTCTCTATGGTGAATGATGCCTATGGACATGTTCCAATCAACATGGAGGATAAAGAGCTAGAAATGAGTGGCTCCTTTGGTGCTATACCTGATCTTGTGCATAGTGTGGAAGAGGCTGACCTTGGCATGGACCAAGGGTTAGATTTGGTTCACATGCTACTGGCTTGTGCTGAGGCTGTGGCATGTAGAGACACCCAAAGGGCACACTTGCTGCTTAACGAAATTTGGGCTTTGGCTAGTCCTTGTGGTGATTCATTGCAGAGAGTCTCCTATTGCTTTGCCACAGGATTGAAGTGTAGGTTGTCACTTTTTCCTCATAATGTCTTCGCAAATGATACACACACAATTAGTGTTATGGATGTCCCTTTGATCACTAGGGAACAAAAGTTGGAAGCTTTTCATGTCCTTTGCCAAACTACTCCTTATCTTGCTTTTGGTTTCATGGCTGCAAATGAAGCTATATTGCAATCATCACATGGAAAAAGCTCCATACACATAATTGATCTAGGAATGGAACATATCCTTCAGTGGCCTTCCTTGTTAAGGGGACTTGTTTCAAGACCTGAGGGGCCTCCAAAGCTCCGGATCACAGGGTTAATCAGCAGTGAAGATGACACAAAACTTAAAACTAGCATGAATGTTCTTGTGGAGGAAGCAAGCTCATTAGGAATACCACTTGAAATTGTTGTAATATCAGAACCTGCAATTCCAACACTTCTTACTAAGGAGAAACTGAACTTGAGAGAAGGAGAAGCTTTATTTGTTAATAGTATCTTGCATTTGCACAAATATGTCAAAGAAAGTAGAGGGTGTTTGAAGGCAATTCTACAATCAATAAAGAAGCTAGGTCCAGTTGCTCTTACAGTGGTAGAGCAAGACACAAACCATAATGGACCCTTCTTCCTTGGGAGGTTTTTGGAATCACTACAATATTACTCTGCCATTTTTGATTCTCTTGAGGAAAGTATGCCTAGAAATAGCCAAAATAGGATGAAAATAGAGTGTGTACACTTCGCTGAAGAAATTCGCAATATTGTTGCTTATGAGGGCTCTGATAGGATGGAAAGACATGAAAGGTTAGACAAATGGAGAAGGAAACTAGGCCAAGCAGGATTTCAGGTAATGCCACTGAAATGCACAAGTAAAGCTAGAAAGATGCTTTCTGTTTATGATTGTAAAGGATATACATTGACCAGTGAGAAGGGTTGCCTTCAACTTGGGTGGAAAGGAAGGCCAATAATGATGGCTTCTGCATGGAAAGTGGTAAGATTGTAA 1599 0.4046 MEDLNSWLSFYMNESANHEHAIRRFCPARMEQDQREECQDQEAVINEIELCSSDSTSTPCLASSEVDDFVDSFINMDQYKYENEDQESLEKHQSFDHFVVNDEDGIDTFSMVNDAYGHVPINMEDKELEMSGSFGAIPDLVHSVEEADLGMDQGLDLVHMLLACAEAVACRDTQRAHLLLNEIWALASPCGDSLQRVSYCFATGLKCRLSLFPHNVFANDTHTISVMDVPLITREQKLEAFHVLCQTTPYLAFGFMAANEAILQSSHGKSSIHIIDLGMEHILQWPSLLRGLVSRPEGPPKLRITGLISSEDDTKLKTSMNVLVEEASSLGIPLEIVVISEPAIPTLLTKEKLNLREGEALFVNSILHLHKYVKESRGCLKAILQSIKKLGPVALTVVEQDTNHNGPFFLGRFLESLQYYSAIFDSLEESMPRNSQNRMKIECVHFAEEIRNIVAYEGSDRMERHERLDKWRRKLGQAGFQVMPLKCTSKARKMLSVYDCKGYTLTSEKGCLQLGWKGRPIMMASAWKVVRL 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi813g00005 532 Pfam GRAS domain family 157 528 IPR005202 -
Gabi813g00005 532 ProSiteProfiles GRAS family profile. 148 528 IPR005202 -
Gabi813g00005 532 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 96 527 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi813g00005 Gabi-Chr813 73522 75120 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi813g00005 152 532 GRAS Transcription Factor Family AT1G66350 38.402 5.45e-74 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gabi813g00005 GRAS 7.2e-104 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi813g00005 - - gmx:100814931 765.763