Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi813g00004 ATGCAGAAAAATCAATACAATTCCATGGAACCTAGAAATGAGGAATTCCATCCTGCATCACAGTCAGTCCTGCAAGAACATCTGGATGTCATGCATAATACACGACCTTCTGCCTTTAACATTTCAGAAAATAAACCTGTACTTAATTATTCCATACAGACTGGTGAGGAATTTGCTCTTGAGTTTATGAGAGATAGGGTGAATCTCAGGAAGCCTGCCTTTCCAAATGTTGTGGGTGATCCCAATTATTCAACCGGGTACATGGAATTGCAAGGCATTCTAGGCCATGCAGGATCTGAAAGTGGGTCAGATATTTCTGTGCTCTCAAAGGTTGAAAAAGGTCCAAAAGAATTTGAAAGAAGGAACTCTTCTCTGCAGCAGGACAGAAATAATTATGGGTCAGCTCGATCAATTCCTAGAACTTCATCTAATCAAGACAATAGCCGAGTCCTTCATCGTATTGCCTCTTCTGGAGCTTCTGACAGCTCATCAGTGAAGATGAAGGTTCTATGTAGCTTTGGTGGTAAAATATTACCACGGCCCAGTGATGGAAAACTTAGATATGTTGGGGGTGAAACACGCATTATTAGTATAAGAAAGGATATACGTTGGCAGGAGCTTATGCAGAAAACATCATCCATATATAATGAAGCTCATGTAATAAAGTATCAGCTCCCTGGAGAAGATCTTGATGCCTTAGTTTCAGTATCTTCTGACGAGGATCTGCGGAATATGATGGAGGAATGTCATGATCTACAAAGCAGAAGAGGATCACTAAAGCTTAGGATGTTTCTATTCTCTATAAATGATTTGGATGATACTCAGTTTGGTCTAGGTAGCATTGATGGTGATTCTGAAATCCAGTATGTAGTTGCTGTCAATGGCATGGACTTGGGATCAAGAAACAACTCAATCCTTCATGGTGCCAGCAGTTCTGCTAATAACATATACGAATTGGATGGACAAAATATTGAGAGGGAGACCAATAGAGTTCTGGCAGAAGCATTTGGAGTCAGCAGTTCTTCCTTGACTGGCAATGTTAACTCATCACTGACAACTCCATCACAACCAATGCTACCATCCTCCTCAAATGCTTATGAAACCTATCCGTTCTTTTATGATGACCAGATCATTCACCCCATGGAAACTAGTCAATATCCACTACACCGTGGTCTTGATCCTTCTAATCACCTGACTCGCAATCTCAGAGGGATTCCAGTTTCTGTGCCTACTCATGGTCTTGTTAGCCAAGGAATCGTAAATGATGGGAAAGCATCCGGTGAGTTGCAAGTACAAATTTCAGATATACCAGAAATGCAGGTAAAAAGAAAGGATGATAATTTCATTCATTCAGGCAATGACCCAGGAAAATATTTCTCCTCGGAAGCACCACATCCTATTCCCTTGCAGCCACTCGAGGGCAATTTGCATGGTAATTTTTCAGAGGCATCAGTTGCAGCTGCCATATCAGAAGGCCATCATCCTGCGCCGCCATCAAAAAACAAGGGTCAGCTCCAGCCATCTGAAGATTCTTCTTCGTTGGTTAGTACTATGAATCCCACACTGGCTCCTAAATCTGGTGAAGATGACTTTTATACAACATCCACTGATGCATTCAGTTGCGCTCATGTTGATGCTGAGTCCAATGTGATTGATTTCAGTTGCCTTGAACCACCTCCACTTCCAAACAGAGTCTATTGTTCGGAGAGATTTCCCAGGGAGCAGGCAGATTGGCTGAATAGGTCTACAAAGTCAGATGATGCATATGGTTCTCACTTGCTCATGTCAGATTTACTTTCTGATTTCAACCAGAAAAATTCAGTTACAGAATCCAGTGACATATTAAACAATGGGAATCTGTCAAATCTGAACACAGTGTCCAGTTCAGCTGCAAAGCCCTTGCATGCAGATGACCATACCATTGATGATGGATTTGCCCAGCTGCATAAGTACAAACAGTTGCCTGATGCAACAAGTCAGGTGAATGCAAAGTTATCACAGCTTGTGGATTCTGAGTTGAAGCATGTATTATTAGACAATAAAGTTTCTAGAAATGAGGATCCAGTTCCTTCTGTTGAACATAATGAGAATCCAGCATCTAAACTTCCAGACCTCATCTTGGGTGAGGTTTCTACCAAGGAATCCAATAATGGTACTAAGGTCCAAGCACAGCCTTTGGCTTTAACTGGAAACACAAGCCAAGATATTTGTCAAGATGATTCTAAATCCAGACCGACTCCTGGTGATATTGTGATTGATATTGAGGACAGGTTTCCCCGTGATTTCCTTTATGATATGTTCTCCAAAGCAATACTTTCTGAAGATTCCTCAAACATTGGTCCATTACCAACAGATAGAGCAGGTTTGAGCTTAAACATGGACAGTCATGAGCCAAAACATTGGTCATATTTTCAGAAGTTGGCCCAAGGGGGGTTGGATAATGTTGCTCTAATTGATCAGGATAATCTTGGTTTTTCATCTACTATTAAAAAAGTACAAGAAAGAGATAGTAAATCTCTGCAATCTGAACCTCTACCAGCAGATGCTGTTTTGGCAGGACAAAAGGATTCCCACCTAAATTTTGGTGAAGAAAATCAGAAAAACTTACCTGTAACAACTAGAACTGAAGCCACTGTTTTTCACCCAAAATATGACCATGCCCAACTTAAGGGAAATGAAAATAAGAACATGGATGCCATAATAGAAAACATAAGACCGCAGGAGTCTGAATATCAGGATGGCAAGAATGAAACAAGTAATGTGGATATAGCCCCACAAGATCCTTCTTTGGGGGAATTTGATATCAGTACTTTGCAGCTCATAAAGAATGAAGATCTTGAAGAGCTACGAGAACTGGGTTCTGGTACCTTTGGGACTGTGTATCATGGAAAATGGAGGGGATCAGATGTTGCAATTAAAAGAATAAAGAAAAGCTGCTTCGCTGGTCGATCTTCAGAACAAGAGAGACTGACTCTTGAGTTCTGGCGGGAAGCTGACATACTTTCCAAGCTTCACCATCCAAACGTGGTGGCATTTTATGGTGTAGTTCAGGATGGACCAGGAGCAACATTAGCGACTGTTACAGAGTACATGGTGGATGGTTCTCTTCGGCATGTTTTGCTCCGTAAGGATAGGTACCTTGATCGCCGCAAGAGGTTGATAATTGCCATGGATGCAGCTTTTGGAATGGAATATTTACACTCAAAAAATATTGTGCATTTTGACTTGAAATGTGACAATTTGCTTGTAAACTTGAAGGATCCTTTACGGCCAATATGCAAGGTTGGCGATTTTGGCCTGTCAAAAATTAAGCGAAATACCCTGGTATCTGGAGGTGTACGAGGAACTCTACCTTGGATGGCACCAGAACTACTGAATGGTAGCAGCAATAAGGTTTCAGAGAAGGTTGATGTGTTCTCCTTTGGCATTGTGTTGTGGGAGATTCTTACTGGTGAAGAGCCATATGCTAATATGCACTATGGTGCGATAATAGGAGGTATTGTGAATAACACACTAAGACCTACAATCCCTAGTTATTGTGATCTTGAGTGGAAAACACTAATGGAGCAGTGTTGGGCACCTAATCCTGCGGTCAGGCCATCCTTCACAGAAATTGCTCGCCGCTTACGTGTAATGTCTGCAGCTGCTAGTCAGACCAAAGGACAGGGCCCCAAGGCATCTAAATGA 3687 0.4166 MQKNQYNSMEPRNEEFHPASQSVLQEHLDVMHNTRPSAFNISENKPVLNYSIQTGEEFALEFMRDRVNLRKPAFPNVVGDPNYSTGYMELQGILGHAGSESGSDISVLSKVEKGPKEFERRNSSLQQDRNNYGSARSIPRTSSNQDNSRVLHRIASSGASDSSSVKMKVLCSFGGKILPRPSDGKLRYVGGETRIISIRKDIRWQELMQKTSSIYNEAHVIKYQLPGEDLDALVSVSSDEDLRNMMEECHDLQSRRGSLKLRMFLFSINDLDDTQFGLGSIDGDSEIQYVVAVNGMDLGSRNNSILHGASSSANNIYELDGQNIERETNRVLAEAFGVSSSSLTGNVNSSLTTPSQPMLPSSSNAYETYPFFYDDQIIHPMETSQYPLHRGLDPSNHLTRNLRGIPVSVPTHGLVSQGIVNDGKASGELQVQISDIPEMQVKRKDDNFIHSGNDPGKYFSSEAPHPIPLQPLEGNLHGNFSEASVAAAISEGHHPAPPSKNKGQLQPSEDSSSLVSTMNPTLAPKSGEDDFYTTSTDAFSCAHVDAESNVIDFSCLEPPPLPNRVYCSERFPREQADWLNRSTKSDDAYGSHLLMSDLLSDFNQKNSVTESSDILNNGNLSNLNTVSSSAAKPLHADDHTIDDGFAQLHKYKQLPDATSQVNAKLSQLVDSELKHVLLDNKVSRNEDPVPSVEHNENPASKLPDLILGEVSTKESNNGTKVQAQPLALTGNTSQDICQDDSKSRPTPGDIVIDIEDRFPRDFLYDMFSKAILSEDSSNIGPLPTDRAGLSLNMDSHEPKHWSYFQKLAQGGLDNVALIDQDNLGFSSTIKKVQERDSKSLQSEPLPADAVLAGQKDSHLNFGEENQKNLPVTTRTEATVFHPKYDHAQLKGNENKNMDAIIENIRPQESEYQDGKNETSNVDIAPQDPSLGEFDISTLQLIKNEDLEELRELGSGTFGTVYHGKWRGSDVAIKRIKKSCFAGRSSEQERLTLEFWREADILSKLHHPNVVAFYGVVQDGPGATLATVTEYMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSYCDLEWKTLMEQCWAPNPAVRPSFTEIARRLRVMSAAASQTKGQGPKASK 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi813g00004 1228 MobiDBLite consensus disorder prediction 1 20 - -
Gabi813g00004 1228 Pfam PB1 domain 183 266 IPR000270 GO:0005515
Gabi813g00004 1228 Gene3D Transferase(Phosphotransferase) domain 1 1034 1227 - -
Gabi813g00004 1228 Pfam Protein tyrosine and serine/threonine kinase 947 1209 IPR001245 GO:0004672|GO:0006468
Gabi813g00004 1228 SUPERFAMILY CAD & PB1 domains 182 273 - -
Gabi813g00004 1228 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 939 1033 - -
Gabi813g00004 1228 MobiDBLite consensus disorder prediction 125 148 - -
Gabi813g00004 1228 ProSiteProfiles Protein kinase domain profile. 946 1211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi813g00004 1228 MobiDBLite consensus disorder prediction 491 529 - -
Gabi813g00004 1228 PRINTS Tyrosine kinase catalytic domain signature 1136 1158 IPR001245 GO:0004672|GO:0006468
Gabi813g00004 1228 PRINTS Tyrosine kinase catalytic domain signature 1028 1041 IPR001245 GO:0004672|GO:0006468
Gabi813g00004 1228 PRINTS Tyrosine kinase catalytic domain signature 1180 1202 IPR001245 GO:0004672|GO:0006468
Gabi813g00004 1228 PRINTS Tyrosine kinase catalytic domain signature 1065 1083 IPR001245 GO:0004672|GO:0006468
Gabi813g00004 1228 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1071 1083 IPR008271 GO:0004672|GO:0006468
Gabi813g00004 1228 CDD STKc_MAP3K-like 952 1209 - -
Gabi813g00004 1228 SMART PB1_new 181 266 IPR000270 GO:0005515
Gabi813g00004 1228 Gene3D - 185 266 - -
Gabi813g00004 1228 SMART serkin_6 946 1212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi813g00004 1228 MobiDBLite consensus disorder prediction 116 148 - -
Gabi813g00004 1228 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 186 268 - -
Gabi813g00004 1228 Gene3D Phosphorylase Kinase; domain 1 939 1033 - -
Gabi813g00004 1228 CDD PB1_UP2 170 266 - -
Gabi813g00004 1228 MobiDBLite consensus disorder prediction 909 928 - -
Gabi813g00004 1228 ProSitePatterns Protein kinases ATP-binding region signature. 952 977 IPR017441 GO:0005524
Gabi813g00004 1228 PANTHER SERINE-THREONINE PROTEIN KINASE 211 1210 - -
Gabi813g00004 1228 SUPERFAMILY Protein kinase-like (PK-like) 937 1208 IPR011009 -
Gabi813g00004 1228 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1034 1226 - -
Gabi813g00004 1228 MobiDBLite consensus disorder prediction 501 529 - -
Gabi813g00004 1228 MobiDBLite consensus disorder prediction 442 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi813g00004 Gabi-Chr813 64445 72434 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi813g00004 33 614 MAP Kinase Kinase Kinase AT1G16270 41.915 3.69e-109 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Gabi813g00004 PK_Tyr_Ser-Thr 8.9e-62 CL0016