Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi813g00003 ATGCAGAAAAATCAATACAATTCCATGGAACCTAGAAATGAGGAATTCCATCCTGCATCACAGTCAGTCCTGCAAGAACATCTGGATGTCATGCATAATACACGACCTTCTGCCTTTAACATTTCAGAAAATAAACCTGTACTTAATTATTCCATACAGACTGGTGAGGAATTTGCTCTTGAGTTTATGAGAGATAGGGTGAATCTCAGGAAGCCTGCCTTTCCAAATGTTGTGGGTGATCCCAATTATTCAACCGGGTACATGGAATTGCAAGGCATTCTAGGCCATGCAGGATCTGAAAGTGGGTCAGATATTTCTGTGCTCTCAAAGGTTGAAAAAGGTCCAAAAGAATTTGAAAGAAGGAACTCTTCTCTGCAGCAGGACAGAAATAATTATGGGTCAGCTCGATCAATTCCTAGAACTTCATCTAATCAAGACAATAGCCGAGTCCTTCATCGTATTGCCTCTTCTGGAGCTTCTGACAGCTCATCAGTGAAGATGAAGGTTCTATGTAGCTTTGGTGGTAAAATATTACCACGGCCCAGTGATGGAAAACTTAGATATGTTGGGGGTGAAACACGCATTATTAGTATAAGAAAGGATATACGTTGGCAGGAGCTTATGCAGAAAACATCATCCATATATAATGAAGCTCATGTAATAAAGTATCAGCTCCCTGGAGAAGATCTTGATGCCTTAGTTTCAGTATCTTCTGACGAGGATCTGCGGAATATGATGGAGGAATGTCATGATCTACAAAGCAGAAGAGGATCACTAAAGCTTAGGATGTTTCTATTCTCTATAAATGATTTGGATGATACTCAGTTTGGTCTAGGTAGCATTGATGGTGATTCTGAAATCCAGTATGTAGTTGCTGTCAATGGCATGGACTTGGGATCAAGAAACAACTCAATCCTTCATGGTGCCAGCAGTTCTGCTAATAACATATACGAATTGGATGGACAAAATATTGAGAGGGAGACCAATAGAGTTCTGGCAGAAGCATTTGGAGTCAGCAGTTCTTCCTTGACTGGCAATGTTAACTCATCACTGACAACTCCATCACAACCAATGCTACCATCCTCCTCAAATGCTTATGAAACCTATCCGTTCTTTTATGATGACCAGATCATTCACCCCATGGAAACTAGTCAATATCCACTACACCGTGGTCTTGATCCTTCTAATCACCTGACTCGCAATCTCAGAGGGATTCCAGTTTCTGTGCCTACTCATGGTCTTGTTAGCCAAGGAATCGTAAATGATGGGAAAGCATCCGGTGAGTTGCAAGTACAAATTTCAGATATACCAGAAATGCAGGTAAAAAGAAAGGATGATAATTTCATTCATTCAGGCAATGACCCAGGAAAATATTTCTCCTCGGAAGCACCACATCCTATTCCCTTGCAGCCACTCGAGGGCAATTTGCATGGTAATTTTTCAGAGGCATCAGTTGCAGCTGCCATATCAGAAGGCCATCATCCTGCGCCGCCATCAAAAAACAAGGGTCAGCTCCAGCCATCTGAAGATTCTTCTTCGTTGGTTAGTACTATGAATCCCACACTGGCTCCTAAATCTGGTGAAGATGACTTTTATACAACATCCACTGATGCATTCAGTTGCGCTCATGTTGATGCTGAGTCCAATGTGATTGATTTCAGTTGCCTTGAACCACCTCCACTTCCAAACAGAGTCTATTGTTCGGAGAGATTTCCCAGGGAGCAGGCAGATTGGCTGAATAGGTCTACAAAGTCAGATGATGCATATGGTTCTCACTTGCTCATGTCAGATTTACTTTCTGATTTCAACCAGAAAAATTCAGTTACAGAATCCAGTGACATATTAAACAATGGGAATCTGTCAAATCTGAACACAGTGTCCAGTTCAGCTGCAAAGCCCTTGCATGCAGATGACCATACCATTGATGATGGATTTGCCCAGCTGCATAAGTACAAACAGTTGCCTGATGCAACAAGTCAGGTGAATGCAAAGTTATCACAGCTTGTGGATTCTGAGTTGAAGCATGTATTATTAGACAATAAAGTTTCTAGAAATGAGGATCCAGTACTCAGTTCTGAAAATAAAACCAATCGTTCGAAAGATAACCATAATATTCTCCTAGTTGATGAAACCAAGGGCACTGAGCATCTTGCATTTCGCCAGGTTCCTTCTGTTGAACATAATGAGAATCCAGCATCTAAACTTCCAGACCTCATCTTGGGTGAGGTTTCTACCAAGGAATCCAATAATGGTACTAAGGTCCAAGCACAGCCTTTGGCTTTAACTGGAAACACAAGCCAAGATATTTGTCAAGATGATTCTAAATCCAGACCGACTCCTGGTGATATTGTGATTGATATTGAGGACAGGTTTCCCCGTGATTTCCTTTATGATATGTTCTCCAAAGCAATACTTTCTGAAGATTCCTCAAACATTGGTCCATTACCAACAGATAGAGCAGGTTTGAGCTTAAACATGGACAGTCATGAGCCAAAACATTGGTCATATTTTCAGAAGTTGGCCCAAGGGGGGTTGGATAATGTTGCTCTAATTGATCAGGATAATCTTGGTTTTTCATCTACTATTAAAAAAGTACAAGAAAGAGATAGTAAATCTCTGCAATCTGAACCTCTACCAGCAGATGCTGTTTTGGCAGGACAAAAGGATTCCCACCTAAATTTTGGTGAAGAAAATCAGAAAAACTTACCTGTAACAACTAGAACTGAAGCCACTGTTTTTCACCCAAAATATGACCATGCCCAACTTAAGGGAAATGAAAATAAGAACATGGATGCCATAATAGAAAACATAAGACCGCAGGAGTCTGAATATCAGGATGGCAAGAATGAAACAAGTAATGTGGATATAGCCCCACAAGATCCTTCTTTGGGGGAATTTGATATCAGTACTTTGCAGCTCATAAAGAATGAAGATCTTGAAGAGCTACGAGAACTGGGTTCTGGTACCTTTGGGACTGTGTATCATGGAAAATGGAGGGGATCAGATGTTGCAATTAAAAGAATAAAGAAAAGCTGCTTCGCTGGTCGATCTTCAGAACAAGAGAGACTGACTCTTGAGTTCTGGCGGGAAGCTGACATACTTTCCAAGCTTCACCATCCAAACGTGGTGGCATTTTATGGTGTAGTTCAGGATGGACCAGGAGCAACATTAGCGACTGTTACAGAGTACATGGTGGATGGTTCTCTTCGGCATGTTTTGCTCCGTAAGGATAGGTACCTTGATCGCCGCAAGAGGTTGATAATTGCCATGGATGCAGCTTTTGGAATGGAATATTTACACTCAAAAAATATTGTGCATTTTGACTTGAAATGTGACAATTTGCTTGTAAACTTGAAGGATCCTTTACGGCCAATATGCAAGGTTGGCGATTTTGGCCTGTCAAAAATTAAGCGAAATACCCTGGTATCTGGAGGTGTACGAGGAACTCTACCTTGGATGGCACCAGAACTACTGAATGGTAGCAGCAATAAGGTTTCAGAGAAGGTTGATGTGTTCTCCTTTGGCATTGTGTTGTGGGAGATTCTTACTGGTGAAGAGCCATATGCTAATATGCACTATGGTGCGATAATAGGAGGTATTGTGAATAACACACTAAGACCTACAATCCCTAGTTATTGTGATCTTGAGTGGAAAACACTAATGGAGCAGTGTTGGGCACCTAATCCTGCGGTCAGGCCATCCTTCACAGAAATTGCTCGCCGCTTACGTGTAATGTCTGCAGCTGCTAGTCAGACCAAAGGACAGGGCCCCAAGGCATCTAAATGA 3786 0.416 MQKNQYNSMEPRNEEFHPASQSVLQEHLDVMHNTRPSAFNISENKPVLNYSIQTGEEFALEFMRDRVNLRKPAFPNVVGDPNYSTGYMELQGILGHAGSESGSDISVLSKVEKGPKEFERRNSSLQQDRNNYGSARSIPRTSSNQDNSRVLHRIASSGASDSSSVKMKVLCSFGGKILPRPSDGKLRYVGGETRIISIRKDIRWQELMQKTSSIYNEAHVIKYQLPGEDLDALVSVSSDEDLRNMMEECHDLQSRRGSLKLRMFLFSINDLDDTQFGLGSIDGDSEIQYVVAVNGMDLGSRNNSILHGASSSANNIYELDGQNIERETNRVLAEAFGVSSSSLTGNVNSSLTTPSQPMLPSSSNAYETYPFFYDDQIIHPMETSQYPLHRGLDPSNHLTRNLRGIPVSVPTHGLVSQGIVNDGKASGELQVQISDIPEMQVKRKDDNFIHSGNDPGKYFSSEAPHPIPLQPLEGNLHGNFSEASVAAAISEGHHPAPPSKNKGQLQPSEDSSSLVSTMNPTLAPKSGEDDFYTTSTDAFSCAHVDAESNVIDFSCLEPPPLPNRVYCSERFPREQADWLNRSTKSDDAYGSHLLMSDLLSDFNQKNSVTESSDILNNGNLSNLNTVSSSAAKPLHADDHTIDDGFAQLHKYKQLPDATSQVNAKLSQLVDSELKHVLLDNKVSRNEDPVLSSENKTNRSKDNHNILLVDETKGTEHLAFRQVPSVEHNENPASKLPDLILGEVSTKESNNGTKVQAQPLALTGNTSQDICQDDSKSRPTPGDIVIDIEDRFPRDFLYDMFSKAILSEDSSNIGPLPTDRAGLSLNMDSHEPKHWSYFQKLAQGGLDNVALIDQDNLGFSSTIKKVQERDSKSLQSEPLPADAVLAGQKDSHLNFGEENQKNLPVTTRTEATVFHPKYDHAQLKGNENKNMDAIIENIRPQESEYQDGKNETSNVDIAPQDPSLGEFDISTLQLIKNEDLEELRELGSGTFGTVYHGKWRGSDVAIKRIKKSCFAGRSSEQERLTLEFWREADILSKLHHPNVVAFYGVVQDGPGATLATVTEYMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSYCDLEWKTLMEQCWAPNPAVRPSFTEIARRLRVMSAAASQTKGQGPKASK 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi813g00003 1261 Gene3D Phosphorylase Kinase; domain 1 972 1066 - -
Gabi813g00003 1261 CDD STKc_MAP3K-like 985 1242 - -
Gabi813g00003 1261 MobiDBLite consensus disorder prediction 1 20 - -
Gabi813g00003 1261 Pfam PB1 domain 183 266 IPR000270 GO:0005515
Gabi813g00003 1261 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1104 1116 IPR008271 GO:0004672|GO:0006468
Gabi813g00003 1261 PANTHER SERINE-THREONINE PROTEIN KINASE 211 1243 - -
Gabi813g00003 1261 MobiDBLite consensus disorder prediction 942 961 - -
Gabi813g00003 1261 MobiDBLite consensus disorder prediction 125 148 - -
Gabi813g00003 1261 MobiDBLite consensus disorder prediction 491 529 - -
Gabi813g00003 1261 SMART serkin_6 979 1245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi813g00003 1261 SUPERFAMILY CAD & PB1 domains 182 273 - -
Gabi813g00003 1261 ProSitePatterns Protein kinases ATP-binding region signature. 985 1010 IPR017441 GO:0005524
Gabi813g00003 1261 SMART PB1_new 181 266 IPR000270 GO:0005515
Gabi813g00003 1261 Gene3D Transferase(Phosphotransferase) domain 1 1067 1260 - -
Gabi813g00003 1261 SUPERFAMILY Protein kinase-like (PK-like) 970 1241 IPR011009 -
Gabi813g00003 1261 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 972 1066 - -
Gabi813g00003 1261 MobiDBLite consensus disorder prediction 114 148 - -
Gabi813g00003 1261 ProSiteProfiles Protein kinase domain profile. 979 1244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi813g00003 1261 PRINTS Tyrosine kinase catalytic domain signature 1213 1235 IPR001245 GO:0004672|GO:0006468
Gabi813g00003 1261 PRINTS Tyrosine kinase catalytic domain signature 1098 1116 IPR001245 GO:0004672|GO:0006468
Gabi813g00003 1261 PRINTS Tyrosine kinase catalytic domain signature 1061 1074 IPR001245 GO:0004672|GO:0006468
Gabi813g00003 1261 PRINTS Tyrosine kinase catalytic domain signature 1169 1191 IPR001245 GO:0004672|GO:0006468
Gabi813g00003 1261 CDD PB1_UP2 170 266 - -
Gabi813g00003 1261 Pfam Protein tyrosine and serine/threonine kinase 980 1242 IPR001245 GO:0004672|GO:0006468
Gabi813g00003 1261 Gene3D - 185 266 - -
Gabi813g00003 1261 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 186 268 - -
Gabi813g00003 1261 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1067 1259 - -
Gabi813g00003 1261 MobiDBLite consensus disorder prediction 442 476 - -
Gabi813g00003 1261 MobiDBLite consensus disorder prediction 501 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi813g00003 Gabi-Chr813 64445 72434 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi813g00003 33 614 MAP Kinase Kinase Kinase AT1G16270 41.915 3.96e-109 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Gabi813g00003 PK_Tyr_Ser-Thr 9.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi813g00003 - - gmx:100799118 1991.47