Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi813g00002 ATGGAACAATCAAGATTCCAAAACACATTCCTATTCAATAGCATGGAACCTAGAGATGAAGAACATCAGCCAGGATCACAATCAGTAATGCAGGACCATCTGGTTAACATGCATTCTAGTAGAAGAGGGCCTGATCTCAATACATCAGAAGTTAAACCTGTACTTAATTACTCGATACAGACGGGTGAGGAATTTGCTCTTGAATTTATGAGAGATAGGGTGAATCTCAGGAAGCCTGTAAGTGATTCCAATTATACAACAGGTTATATGGAGCTGAAAGGCATTTTAGGCATCAGTCATGCAGGGTCTGAAACAGGATCAGATATTTCTATGCTCTCAATGGTTGAAAAATATCCAAAAGAGTTCGATAGAATGAACACATCTACACATGGAGACAGAAGCAATTATGGGTCAATTCGATCGATATCAAAAGCTTCACTGAATCAGGACAATAGGCAATTTGTGCATGGCTATGGTTCTTCTGGAGGTTATGATACCTCATCAATGATGATGAAATTTCTTTGCAGCTTTGGTGGTAGAATATTGCCACGACCCTCTGATGGAAAGCTAAGGTATGTTGGAGGCCAAACACGCATTCTTCGTATAAGAAAGGACATATCTTGGCAGGAACTTATGCAGAAAGCATTGCTAATCTATAATCAGGTTCATGTAATCAAGTATCAGCTTCCAGGGGAAGAACTTGATGCTTTGGTATCTGTGTCATCTGATGAGGATTTGCAGAATATGATGGAGGAATTTAATCATGTAGAAGATAGAGAAGGATCACAAAAGCTTAGGATGTTTTTGTTCTCAATGAGTGATTTGGAGGATGCTCAGTTTGGTCTCAGCACCGGAGGTGATGATTCTGAGATCCAGTATGTTGTTGCTGTTAATGGCATGGACTTGGGATCAAGAAAAAACTCAACCCTAATTGGTGTCAGCTTTTCAGCAAATGATATGAATGAATTGGACAGGCAAAATATTGACAGAGAGAATTATAGAGTTTCTGTAGAATCTGTAGGTGCTGGCAATGCTCCCCTGACTAACAATTTTGACTCATCATTGGTTAATCAGTCTTCACAACCAGTGCTACCAACTTCCTCAAATTGTTATGAAACCTATCCAATGTTTTATGGTGATCAAATGATGGGCCATGGCGAACCTAGTGGTCAATATTTTATTAATCATGGCCTTAATCCTTCTCATAAACCTGTTATTGGAGAGACTCCTATTACTATGCCTCCTCATATGCTGATTAATCAACAAGAGGTTTTCAATGAAGGCCTTCCACCTATTGGATTACAAGTACAAAATTCAGAAATATCAGCAACATTGGCGAAAAAGATGGGTGATAGTTCATTTCAACAAGGAAGTGACCCTGGGGATGTTTTATCCTTGGAAAGACCATCTCCAGCTCCTGCACAACTGTTTAATGGTTACTTGAGAAATAATTTCCCTGAAGCATCAGTTATGGTTACTATGCCAGAGGGGCATTCATTACCTCCAACAAAAATGGACCAGATCCAAGATTATGAAGAGGCTTCTTCTACATCTAGCAGTGCATTTGGTCCTGCTTATGTTGATTCCCACCCCAATGGTGTTGACTTGAGTTCTCTTCACCCGCCTCCTCTTCCTAGAAGAGTTTACTATTCAGAAAGAATTCCCAGGGAGCAAGTGGAGTTGCTGAATCGGTCCTCAAAGTCGGATGATGCACACAGTTCTCAGTTTCATGTTTCAGATTTGCTTTCTGATGTCAACCCGCCGGATTCAGTTACAGAAACTGGTGATAACTTGCATGATGCAAACAATCAGATGAATTCAGAGCTAACTGAGAATGTGAATCCTGAGTTGAAGCAGGTTTCTTCTGTTAAGCACCATGATGATCCAGCATCCAATCTTCCAGATATTGATTGGGGTGATACCTCTGTGAAAGAACCTAATGAAGATTTTAATGTGCAAACACTACCTGTTTCTTCAAATGGGAACACAACTACAAAAGATGATTCTCAAGATTTTCATTCCAATGTTGTTTCCAAACAAGCACAAGGTGACATTCTTATTGATATTAATGATCGATTCCCGCGTCAATTGCTTAGTGACATGTTCTCTAAAGCAATACTTGAAGAATATCCCTCTGGTATACATCCATTAACCTCAGATGGGGTGGGGCTAAGCATAAACATGGAAAATCATGAACCTAAACCATGGTCTTATTTTCAAAAATTGGCTCAAGAAGGGATCGATAATGTGTCTCTTATTGACCAGGATCATCTTGGTTTTTTACCTGCGGTAGGAACAATGGTAGGAGATAATGGAACTCAACATGTTGCACCTTTAACAACTGATGAAGTTTCTCTAAACCATGCAGAGTCCCACCTCAATTTTGGTGAAGAAAATCAGGAAGACATACATGGAAAGATTGGAAAAGAAACCTCTGTTCTTAAGTCAAATTATGATCATTCCCAAGTGAACGATACTGAAAGTATGCAATTTGATGCTATGTTGGAAAACCTAAGAGCACAAGAGTCAGAATCTGAGGTTGGGAAGTTTGAAACCAGAAACAGTGATCTACCTCCTCTTGATCCTTCTTTAGGAGAATTTGATATGAGTACCTTGCAGGTCATTATGAATGAAGATCTTGAAGAGCTGAGGGAACTTGGTTCTGGTACCTTTGGGACTGTGTATCATGGAAAATGGAGAGGAACAGATGTTGCCATTAAAAGAATAAAGAAAAGCTGCTTCACTGGTCGATCATCTGAGCAAGAGAGACTGACTGTCGAATTCTGGCGGGAAGCTGACATTCTTTCCAAGCTTCATCATCCAAATGTGGTGGCATTTTATGGTGTGGTGCAAGATGGACCGGGAGGAACGATGGCCACTGTTGCAGAGTACATGGTGGATGGTTCTCTTAGACATGTATTACTTCGCAAGGATAGGTATCTTGATCGTCGCAAGAGACTGATAATTGCAATGGATGCAGCTTTTGGAATGGAATATTTGCACTCAAAAAATATTGTGCATTTCGACTTAAAATGTGACAATTTGCTTGTGAACTTGAAAGATCCTTTAAGGCCGATATGCAAGGTTGGTGATTTTGGCTTGTCAAAAATCAAACGAAATACCTTGGTTTCTGGTGGTGTGCGGGGGACTTTACCTTGGATGGCACCAGAGCTGCTTAATGGTAGCAGCAACAAGGTCTCAGAAAAGGTTGATGTGTTCTCCTTTGGCATAGTATTATGGGAGATTCTAACTGGTGAGGAGCCATATGCCAATATGCACTATGGTGCAATCATAGGTGGGATTGTTAATAACACATTAAGGCCAACAATACCAAATTATTGTGATCATGAATGGAGAACACTGATGGAGCAATGTTGGGCACCCAATCCTGCAGCTAGGCCATCCTTCACTGAAATAGCTAGTCGACTGCGTGTTATGTCTGCAGCTGCTAGAGAAACCAAAACACACAAGGCATCTAAATGA 3483 0.4042 MEQSRFQNTFLFNSMEPRDEEHQPGSQSVMQDHLVNMHSSRRGPDLNTSEVKPVLNYSIQTGEEFALEFMRDRVNLRKPVSDSNYTTGYMELKGILGISHAGSETGSDISMLSMVEKYPKEFDRMNTSTHGDRSNYGSIRSISKASLNQDNRQFVHGYGSSGGYDTSSMMMKFLCSFGGRILPRPSDGKLRYVGGQTRILRIRKDISWQELMQKALLIYNQVHVIKYQLPGEELDALVSVSSDEDLQNMMEEFNHVEDREGSQKLRMFLFSMSDLEDAQFGLSTGGDDSEIQYVVAVNGMDLGSRKNSTLIGVSFSANDMNELDRQNIDRENYRVSVESVGAGNAPLTNNFDSSLVNQSSQPVLPTSSNCYETYPMFYGDQMMGHGEPSGQYFINHGLNPSHKPVIGETPITMPPHMLINQQEVFNEGLPPIGLQVQNSEISATLAKKMGDSSFQQGSDPGDVLSLERPSPAPAQLFNGYLRNNFPEASVMVTMPEGHSLPPTKMDQIQDYEEASSTSSSAFGPAYVDSHPNGVDLSSLHPPPLPRRVYYSERIPREQVELLNRSSKSDDAHSSQFHVSDLLSDVNPPDSVTETGDNLHDANNQMNSELTENVNPELKQVSSVKHHDDPASNLPDIDWGDTSVKEPNEDFNVQTLPVSSNGNTTTKDDSQDFHSNVVSKQAQGDILIDINDRFPRQLLSDMFSKAILEEYPSGIHPLTSDGVGLSINMENHEPKPWSYFQKLAQEGIDNVSLIDQDHLGFLPAVGTMVGDNGTQHVAPLTTDEVSLNHAESHLNFGEENQEDIHGKIGKETSVLKSNYDHSQVNDTESMQFDAMLENLRAQESESEVGKFETRNSDLPPLDPSLGEFDMSTLQVIMNEDLEELRELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQDGPGGTMATVAEYMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPNYCDHEWRTLMEQCWAPNPAARPSFTEIASRLRVMSAAARETKTHKASK 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi813g00002 1160 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1005 1017 IPR008271 GO:0004672|GO:0006468
Gabi813g00002 1160 MobiDBLite consensus disorder prediction 620 646 - -
Gabi813g00002 1160 MobiDBLite consensus disorder prediction 510 542 - -
Gabi813g00002 1160 MobiDBLite consensus disorder prediction 562 603 - -
Gabi813g00002 1160 Gene3D Phosphorylase Kinase; domain 1 873 967 - -
Gabi813g00002 1160 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 968 1160 - -
Gabi813g00002 1160 MobiDBLite consensus disorder prediction 1 26 - -
Gabi813g00002 1160 SMART serkin_6 880 1146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi813g00002 1160 SMART PB1_new 185 272 IPR000270 GO:0005515
Gabi813g00002 1160 MobiDBLite consensus disorder prediction 451 470 - -
Gabi813g00002 1160 Gene3D - 189 272 - -
Gabi813g00002 1160 CDD PB1_UP2 174 270 - -
Gabi813g00002 1160 MobiDBLite consensus disorder prediction 575 603 - -
Gabi813g00002 1160 SUPERFAMILY Protein kinase-like (PK-like) 869 1142 IPR011009 -
Gabi813g00002 1160 Gene3D Transferase(Phosphotransferase) domain 1 968 1160 - -
Gabi813g00002 1160 MobiDBLite consensus disorder prediction 510 525 - -
Gabi813g00002 1160 PRINTS Tyrosine kinase catalytic domain signature 1070 1092 IPR001245 GO:0004672|GO:0006468
Gabi813g00002 1160 PRINTS Tyrosine kinase catalytic domain signature 1114 1136 IPR001245 GO:0004672|GO:0006468
Gabi813g00002 1160 PRINTS Tyrosine kinase catalytic domain signature 999 1017 IPR001245 GO:0004672|GO:0006468
Gabi813g00002 1160 PRINTS Tyrosine kinase catalytic domain signature 962 975 IPR001245 GO:0004672|GO:0006468
Gabi813g00002 1160 CDD STKc_MAP3K-like 886 1143 - -
Gabi813g00002 1160 MobiDBLite consensus disorder prediction 843 862 - -
Gabi813g00002 1160 SUPERFAMILY CAD & PB1 domains 186 275 - -
Gabi813g00002 1160 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 873 967 - -
Gabi813g00002 1160 ProSiteProfiles Protein kinase domain profile. 880 1145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi813g00002 1160 PANTHER SERINE-THREONINE PROTEIN KINASE 215 1144 - -
Gabi813g00002 1160 ProSitePatterns Protein kinases ATP-binding region signature. 886 911 IPR017441 GO:0005524
Gabi813g00002 1160 Pfam Protein tyrosine and serine/threonine kinase 881 1143 IPR001245 GO:0004672|GO:0006468
Gabi813g00002 1160 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 190 272 - -
Gabi813g00002 1160 Pfam PB1 domain 187 270 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi813g00002 Gabi-Chr813 44700 57996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi813g00002 47 1160 MAP Kinase Kinase Kinase AT1G16270 49.587 0.0 996
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Gabi813g00002 PK_Tyr_Ser-Thr 2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi813g00002 - - gmx:100799639 1872.83