Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi812g00003 ATGGAACAGAAGCACGTTCTGTTGTCAGCATTGAGTGTTGGGGTTGGATTGGGTGTGGGGCTTGGATTGAGTTCAGGACAGGCTGTGCAGAAATGGGTTGGAGGGAACTGTGACTCTGATGAGATTTCTGGGGAGCAGATTGTGCATGAGCTCAAGAAACTGCTCCTTGATGGGAAGGATAGTAAAGTTACATTTGATGAGTTTCCTTATTTCTTAAGTGAAAGAACTCGAGTTTTGTTGACAAGTGCTGCATATGTTCATTTAAAACATCTTAACTATTCGAAGCACACAAGGAACCTCTCACCAGCAAGCAGGGCTATTTTGCTCTCTGGTCCTGCAGAGCTTTACCAGCAAATGCTTGCTAGAGCTTTAGCACATTACTTTGAATCAAAGTTGCTGTTGCTAGATATTACTGACTTCTCTGTGAAGTTGCAGAGCAAATATGGAGGTTCTAGAAAAGAACCATCTTTGAAAAGGTCCATATCTGAGGTGACTTTGGAGCGAATGTCTGGTTTGTTTGGTTCCTTTTCAATCCTGCCTTCAACAGGTGAAACTAGAGGAACTCTGCGTCAAAATAGCAGTGCTCTTGAAAGTTCCAATAATCCTCCAAAGATTCGAAGGAATGCGTCTGTTGCTTCTGATCTAAGTAGCACTTCTTCCCATGTTGGTCCAACAATTGCAGCTCCTTTAAAGCGAACAAGTAGCTTCCGTTTTGATGAAAAGCTCTTCGTGCAGTCACTTTACAAGGTCTTGGTTTCTATCTCAGAAACTGGTTCCATCATTTTATACATCAGGGATGTTGAGAAGCTTGTTTTCCAATCACCAAGGTTATTTAATTTATTACAAAAAATGATAAAGAAACTGTCAGGCTCGGTGTTGATACTCGGTTCCCAGATATTAGATTCTGAAAATGATTACAAAGAAATCAATGAAAGGCTCACTATGTTATTCCCCTACAACATTGAGATCAAAACTCCTGAAGATGAAACTCATACTGGTAGCTGGAAAGGTCAACTGGAGGAGGACATGAAAGTTATTCAGTTTCAAGATAACAGAAACCACATTGCTGAAGTACTTGCAGCAAATGACATTGAGTGTGATGACTTAACTTTAATCTGCCATGCTGACACTATGATACTGAGCAATTATATTGAAGAAATTGTGGTATCTGCAATATCTTACCATTTGATGAATACAAAGGATCCAGAATACCGAAATGGCAAGCTAGTTATATCAGCAAATAGTTTGTCCCGTGGATTGAGTCTGTTCCAGGAAGGCAAGAGTAGTGAGAATCTGAAGACTAATGAATCTAACAAGGAAAATGCTGGAGAAGATACTACTGGTGCAAAGAATGAGGTACGGTCTGATAACCAAGCACCTGAAAACAAAAATGAGACAGAGAAATCTATCCCTGTAACAAAGAAAGATGGCGAAAATGCTGCACCTGTAAAAGCAGAAATTCCTGACAATGAGTTTGAGAAGCGCATAAGACCAGAGGTTATCCCTGCAAATGAGATAGGGGTGACATTTGCAGATATTGGTGCATTGGATGAGATTAAAGAATCACTTCAAGAGCTGGTAATGCTTCCCCTTAGAAGACCAGACCTCTTCAAAGGTGGTCTTCTAAAGCCATGTAGAGGCATATTGCTATTTGGCCCCCCCGGTACAGGAAAAACAATGTTAGCAAAGGCAATAGCAAATGAAGCTGGAGCAAGTTTCATTAATGTCTCAATGTCCACCATCACTTCAAAATGGTTTGGAGAAGATGAAAAGAATGTCCGCGCTCTATTCACACTAGCTGCTAAGGTTGCACCAACTATTATCTTTGTTGATGAGGTTGACAGCATGCTTGGGCAAAGGACTAGAGTAGGAGAGCATGAAGCCATGAGGAAGATTAAAAATGAATTCATGACACACTGGGATGGGCTATTATCAAGACCTGGTGAGCAAATTCTTGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCAATTATAAGAAGGTTTGAGCGCAGGATCATGGTTGGTCTTCCATCTGTTGAGAACCGGGAAATGATTCTAAAAACTCTCCTCTCTAAGGAAAAACATGAAAACTTAGACTTCAAAGAGCTGGCAACCATGACAGAAGGATTTAGTGGAAGTGATCTTAAGAATTTGTGCATCACTGCGGCTTATCGACCTGTTAGAGAGCTAATACAGCAGGAGAGACTAAAGGAATTGGAAAAGAAGAAAAACGAGGCAGAAGGCCAAACCTCAGAAGATGCTTCGAATAATAAAGAAAAAGAAGAGCGAGAAATTATCCTGAGGCCTTTAAACATGGAAGACATGAAACAGGCTAAGACTCAGGTGGCTGCAAGTTTTGCCGCAGAAGGAGCAGTAATGAGTGAGCTGAAACAGTGGAATGATTTATATGGAGAAGGTGGTTCAAGGAAGAAACAGCAACTCACTTACTTCCTATAG 2466 0.41 MEQKHVLLSALSVGVGLGVGLGLSSGQAVQKWVGGNCDSDEISGEQIVHELKKLLLDGKDSKVTFDEFPYFLSERTRVLLTSAAYVHLKHLNYSKHTRNLSPASRAILLSGPAELYQQMLARALAHYFESKLLLLDITDFSVKLQSKYGGSRKEPSLKRSISEVTLERMSGLFGSFSILPSTGETRGTLRQNSSALESSNNPPKIRRNASVASDLSSTSSHVGPTIAAPLKRTSSFRFDEKLFVQSLYKVLVSISETGSIILYIRDVEKLVFQSPRLFNLLQKMIKKLSGSVLILGSQILDSENDYKEINERLTMLFPYNIEIKTPEDETHTGSWKGQLEEDMKVIQFQDNRNHIAEVLAANDIECDDLTLICHADTMILSNYIEEIVVSAISYHLMNTKDPEYRNGKLVISANSLSRGLSLFQEGKSSENLKTNESNKENAGEDTTGAKNEVRSDNQAPENKNETEKSIPVTKKDGENAAPVKAEIPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLSRPGEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREMILKTLLSKEKHENLDFKELATMTEGFSGSDLKNLCITAAYRPVRELIQQERLKELEKKKNEAEGQTSEDASNNKEKEEREIILRPLNMEDMKQAKTQVAASFAAEGAVMSELKQWNDLYGEGGSRKKQQLTYFL 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi812g00003 821 MobiDBLite consensus disorder prediction 427 480 - -
Gabi812g00003 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 507 739 IPR027417 -
Gabi812g00003 821 Coils Coil 732 767 - -
Gabi812g00003 821 Pfam ATPase family associated with various cellular activities (AAA) 548 678 IPR003959 GO:0005524|GO:0016887
Gabi812g00003 821 Gene3D - 507 788 IPR027417 -
Gabi812g00003 821 Gene3D - 680 783 - -
Gabi812g00003 821 MobiDBLite consensus disorder prediction 743 765 - -
Gabi812g00003 821 MobiDBLite consensus disorder prediction 432 480 - -
Gabi812g00003 821 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 507 682 - -
Gabi812g00003 821 Pfam AAA+ lid domain 700 743 IPR041569 -
Gabi812g00003 821 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 48 820 - -
Gabi812g00003 821 ProSitePatterns AAA-protein family signature. 651 670 IPR003960 GO:0005524|GO:0016887
Gabi812g00003 821 MobiDBLite consensus disorder prediction 183 219 - -
Gabi812g00003 821 SMART AAA_5 544 681 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi812g00003 Gabi-Chr812 53667 61470 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi812g00003 474 739 Calmodulin-binding Proteins AT3G56690 37.455 2.52e-43 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi812g00003 - - gmx:100817952 1355.12