Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi812g00002 ATGGAACAGAAGCACGTTCTGTTGTCAGCATTGAGTGTTGGGGTTGGATTGGGTGTGGGGCTTGGATTGAGTTCAGGACAGGCTGTGCAGAAATGGGTTGGAGGGAACTGTGACTCTGATGAGATTTCTGGGGAGCAGATTGTGCATGAGCTCAAGAAACTGCTCCTTGATGGGAAGGATAGTAAAGTTACATTTGATGAGTTTCCTTATTTCTTAAGTGAAAGAACTCGAGTTTTGTTGACAAGTGCTGCATATGTTCATTTAAAACATCTTAACTATTCGAAGCACACAAGGAACCTCTCACCAGCAAGCAGGGCTATTTTGCTCTCTGGTCCTGCAGAGCTTTACCAGCAAATGCTTGCTAGAGCTTTAGCACATTACTTTGAATCAAAGTTGCTGTTGCTAGATATTACTGACTTCTCTGTGAAGTTGCAGAGCAAATATGGAGGTTCTAGAAAAGAACCATCTTTGAAAAGGTCCATATCTGAGGTGACTTTGGAGCGAATGTCTGGTTTGTTTGGTTCCTTTTCAATCCTGCCTTCAACAGGTGAAACTAGAGGAACTCTGCGTCAAAATAGCAGTGCTCTTGAAAGTTCCAATAATCCTCCAAAGATTCGAAGGAATGCGTCTGTTGCTTCTGATCTAAGTAGCACTTCTTCCCATGTTGGTCCAACAATTGCAGCTCCTTTAAAGCGAACAAGTAGCTTCCGTTTTGATGAAAAGCTCTTCGTGCAGTCACTTTACAAGGTCTTGGTTTCTATCTCAGAAACTGGTTCCATCATTTTATACATCAGGGATGTTGAGAAGCTTGTTTTCCAATCACCAAGGTTATTTAATTTATTACAAAAAATGATAAAGAAACTGTCAGGCTCGGTGTTGATACTCGGTTCCCAGATATTAGATTCTGAAAATGATTACAAAGAAATCAATGAAAGGCTCACTATGTTATTCCCCTACAACATTGAGATCAAAACTCCTGAAGATGAAACTCATACTGGTAGCTGGAAAGGTCAACTGGAGGAGGACATGAAAGTTATTCAGTTTCAAGATAACAGAAACCACATTGCTGAAGTACTTGCAGCAAATGACATTGAGTGTGATGACTTAACTTTAATCTGCCATGCTGACACTATGATACTGAGCAATTATATTGAAGAAATTGTGGTATCTGCAATATCTTACCATTTGATGAATACAAAGGATCCAGAATACCGAAATGGCAAGCTAGTTATATCAGCAAATAGTTTGTCCCGTGGATTGAGTCTGTTCCAGGAAGGCAAGAGTAGTGAGAATCTGAAGACTAATGAATCTAACAAGGTACAAGATACTACTGGTGCAAAGAATGAGGTACGGTCTGATAACCAAGCACCTGAAAACAAAAATGAGACAGAGAAATCTATCCCTGTAACAAAGAAAGATGGCGAAAATGCTGCACCTGAAATTCCTGACAATGAGTTTGAGAAGCGCATAAGACCAGAGGTTATCCCTGCAAATGAGATAGGGGTGACATTTGCAGATATTGGTGCATTGGATGAGATTAAAGAATCACTTCAAGAGCTGGTAATGCTTCCCCTTAGAAGACCAGACCTCTTCAAAGGTGGTCTTCTAAAGCCATGTAGAGGCATATTGCTATTTGGCCCCCCCGGTACAGGAAAAACAATGTTAGCAAAGGCAATAGCAAATGAAGCTGGAGCAAGTTTCATTAATGTCTCAATGTCCACCATCACTTCAAAATGGTTTGGAGAAGATGAAAAGAATGTCCGCGCTCTATTCACACTAGCTGCTAAGGTTGCACCAACTATTATCTTTGTTGATGAGGTTGACAGCATGCTTGGGCAAAGGACTAGAGTAGGAGAGCATGAAGCCATGAGGAAGATTAAAAATGAATTCATGACACACTGGGATGGGCTATTATCAAGACCTGGTGAGCAAATTCTTGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCAATTATAAGAAGGTTTGAGCGCAGGATCATGGTTGGTCTTCCATCTGTTGAGAACCGGGAAATGATTCTAAAAACTCTCCTCTCTAAGGAAAAACATGAAAACTTAGACTTCAAAGAGCTGGCAACCATGACAGAAGGATTTAGTGGAAGTGATCTTAAGAATTTGTGCATCACTGCGGCTTATCGACCTGTTAGAGAGCTAATACAGCAGGAGAGACTAAAGGAATTGGAAAAGAAGAAAAACGAGGCAGAAGGCCAAACCTCAGAAGATGCTTCGAATAATAAAGAAAAAGAAGAGCGAGAAATTATCCTGAGGCCTTTAAACATGGAAGACATGAAACAGGCTAAGACTCAGGTGGCTGCAAGTTTTGCCGCAGAAGGAGCAGTAATGAGTGAGCTGAAACAGTGGAATGATTTATATGGAGAAGGTGGTTCAAGGAAGAAACAGCAACTCACTTACTTCCTATAG 2448 0.4101 MEQKHVLLSALSVGVGLGVGLGLSSGQAVQKWVGGNCDSDEISGEQIVHELKKLLLDGKDSKVTFDEFPYFLSERTRVLLTSAAYVHLKHLNYSKHTRNLSPASRAILLSGPAELYQQMLARALAHYFESKLLLLDITDFSVKLQSKYGGSRKEPSLKRSISEVTLERMSGLFGSFSILPSTGETRGTLRQNSSALESSNNPPKIRRNASVASDLSSTSSHVGPTIAAPLKRTSSFRFDEKLFVQSLYKVLVSISETGSIILYIRDVEKLVFQSPRLFNLLQKMIKKLSGSVLILGSQILDSENDYKEINERLTMLFPYNIEIKTPEDETHTGSWKGQLEEDMKVIQFQDNRNHIAEVLAANDIECDDLTLICHADTMILSNYIEEIVVSAISYHLMNTKDPEYRNGKLVISANSLSRGLSLFQEGKSSENLKTNESNKVQDTTGAKNEVRSDNQAPENKNETEKSIPVTKKDGENAAPEIPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLSRPGEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREMILKTLLSKEKHENLDFKELATMTEGFSGSDLKNLCITAAYRPVRELIQQERLKELEKKKNEAEGQTSEDASNNKEKEEREIILRPLNMEDMKQAKTQVAASFAAEGAVMSELKQWNDLYGEGGSRKKQQLTYFL 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi812g00002 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 501 733 IPR027417 -
Gabi812g00002 815 MobiDBLite consensus disorder prediction 427 480 - -
Gabi812g00002 815 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 48 814 - -
Gabi812g00002 815 ProSitePatterns AAA-protein family signature. 645 664 IPR003960 GO:0005524|GO:0016887
Gabi812g00002 815 Pfam AAA+ lid domain 694 737 IPR041569 -
Gabi812g00002 815 SMART AAA_5 538 675 IPR003593 GO:0016887
Gabi812g00002 815 MobiDBLite consensus disorder prediction 453 480 - -
Gabi812g00002 815 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 501 676 - -
Gabi812g00002 815 Gene3D - 674 777 - -
Gabi812g00002 815 MobiDBLite consensus disorder prediction 427 452 - -
Gabi812g00002 815 MobiDBLite consensus disorder prediction 183 219 - -
Gabi812g00002 815 Coils Coil 726 761 - -
Gabi812g00002 815 MobiDBLite consensus disorder prediction 737 759 - -
Gabi812g00002 815 Gene3D - 501 782 IPR027417 -
Gabi812g00002 815 Pfam ATPase family associated with various cellular activities (AAA) 542 672 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi812g00002 Gabi-Chr812 53667 61470 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi812g00002 460 733 Calmodulin-binding Proteins AT3G56690 36.396 2.44e-43 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi812g00002 - - gmx:100817952 1333.55