Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi812g00001 ATGGAACAGAAGCACGTTCTGTTGTCAGCATTGAGTGTTGGGGTTGGATTGGGTGTGGGGCTTGGATTGAGTTCAGGACAGGCTGTGCAGAAATGGGTTGGAGGGAACTGTGACTCTGATGAGATTTCTGGGGAGCAGATTGTGCATGAGCTCAAGAAACTGCTCCTTGATGGGAAGGATAGTAAAGTTACATTTGATGAGTTTCCTTATTTCTTAAGTGAAAGAACTCGAGTTTTGTTGACAAGTGCTGCATATGTTCATTTAAAACATCTTAACTATTCGAAGCACACAAGGAACCTCTCACCAGCAAGCAGGGCTATTTTGCTCTCTGGTCCTGCAGAGCTTTACCAGCAAATGCTTGCTAGAGCTTTAGCACATTACTTTGAATCAAAGTTGCTGTTGCTAGATATTACTGACTTCTCTGTGAAGTTGCAGAGCAAATATGGAGGTTCTAGAAAAGAACCATCTTTGAAAAGGTCCATATCTGAGGTGACTTTGGAGCGAATGTCTGGTTTGTTTGGTTCCTTTTCAATCCTGCCTTCAACAGGTGAAACTAGAGGAACTCTGCGTCAAAATAGCAGTGCTCTTGAAAGTTCCAATAATCCTCCAAAGATTCGAAGGAATGCGTCTGTTGCTTCTGATCTAAGTAGCACTTCTTCCCATGTTGGTCCAACAATTGCAGCTCCTTTAAAGCGAACAAGTAGCTTCCGTTTTGATGAAAAGCTCTTCGTGCAGTCACTTTACAAGGTCTTGGTTTCTATCTCAGAAACTGGTTCCATCATTTTATACATCAGGGATGTTGAGAAGCTTGTTTTCCAATCACCAAGGTTATTTAATTTATTACAAAAAATGATAAAGAAACTGTCAGGCTCGGTGTTGATACTCGGTTCCCAGATATTAGATTCTGAAAATGATTACAAAGAAATCAATGAAAGGCTCACTATGTTATTCCCCTACAACATTGAGATCAAAACTCCTGAAGATGAAACTCATACTGGTAGCTGGAAAGGTCAACTGGAGGAGGACATGAAAGTTATTCAGTTTCAAGATAACAGAAACCACATTGCTGAAGTACTTGCAGCAAATGACATTGAGTGTGATGACTTAACTTTAATCTGCCATGCTGACACTATGATACTGAGCAATTATATTGAAGAAATTGTGGTATCTGCAATATCTTACCATTTGATGAATACAAAGGATCCAGAATACCGAAATGGCAAGCTAGTTATATCAGCAAATAGTTTGTCCCGTGGATTGAGTCTGTTCCAGGAAGGCAAGAGTAGTGAGAATCTGAAGACTAATGAATCTAACAAGGTACAAGATACTACTGGTGCAAAGAATGAGGTACGGTCTGATAACCAAGCACCTGAAAACAAAAATGAGACAGAGAAATCTATCCCTGTAACAAAGAAAGATGGCGAAAATGCTGCACCTGTAAAAGCAGAAATTCCTGACAATGAGTTTGAGAAGCGCATAAGACCAGAGGTTATCCCTGCAAATGAGATAGGGGTGACATTTGCAGATATTGGTGCATTGGATGAGATTAAAGAATCACTTCAAGAGCTGGTAATGCTTCCCCTTAGAAGACCAGACCTCTTCAAAGGTGGTCTTCTAAAGCCATGTAGAGGCATATTGCTATTTGGCCCCCCCGGTACAGGAAAAACAATGTTAGCAAAGGCAATAGCAAATGAAGCTGGAGCAAGTTTCATTAATGTCTCAATGTCCACCATCACTTCAAAATGGTTTGGAGAAGATGAAAAGAATGTCCGCGCTCTATTCACACTAGCTGCTAAGGTTGCACCAACTATTATCTTTGTTGATGAGGTTGACAGCATGCTTGGGCAAAGGACTAGAGTAGGAGAGCATGAAGCCATGAGGAAGATTAAAAATGAATTCATGACACACTGGGATGGGCTATTATCAAGACCTGGTGAGCAAATTCTTGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCAATTATAAGAAGGTTTGAGCGCAGGATCATGGTTGGTCTTCCATCTGTTGAGAACCGGGAAATGATTCTAAAAACTCTCCTCTCTAAGGAAAAACATGAAAACTTAGACTTCAAAGAGCTGGCAACCATGACAGAAGGATTTAGTGGAAGTGATCTTAAGAATTTGTGCATCACTGCGGCTTATCGACCTGTTAGAGAGCTAATACAGCAGGAGAGACTAAAGGAATTGGAAAAGAAGAAAAACGAGGCAGAAGGCCAAACCTCAGAAGATGCTTCGAATAATAAAGAAAAAGAAGAGCGAGAAATTATCCTGAGGCCTTTAAACATGGAAGACATGAAACAGGCTAAGACTCAGGTGGCTGCAAGTTTTGCCGCAGAAGGAGCAGTAATGAGTGAGCTGAAACAGTGGAATGATTTATATGGAGAAGGTGGTTCAAGGAAGAAACAGCAACTCACTTACTTCCTATAG 2457 0.4098 MEQKHVLLSALSVGVGLGVGLGLSSGQAVQKWVGGNCDSDEISGEQIVHELKKLLLDGKDSKVTFDEFPYFLSERTRVLLTSAAYVHLKHLNYSKHTRNLSPASRAILLSGPAELYQQMLARALAHYFESKLLLLDITDFSVKLQSKYGGSRKEPSLKRSISEVTLERMSGLFGSFSILPSTGETRGTLRQNSSALESSNNPPKIRRNASVASDLSSTSSHVGPTIAAPLKRTSSFRFDEKLFVQSLYKVLVSISETGSIILYIRDVEKLVFQSPRLFNLLQKMIKKLSGSVLILGSQILDSENDYKEINERLTMLFPYNIEIKTPEDETHTGSWKGQLEEDMKVIQFQDNRNHIAEVLAANDIECDDLTLICHADTMILSNYIEEIVVSAISYHLMNTKDPEYRNGKLVISANSLSRGLSLFQEGKSSENLKTNESNKVQDTTGAKNEVRSDNQAPENKNETEKSIPVTKKDGENAAPVKAEIPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLSRPGEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREMILKTLLSKEKHENLDFKELATMTEGFSGSDLKNLCITAAYRPVRELIQQERLKELEKKKNEAEGQTSEDASNNKEKEEREIILRPLNMEDMKQAKTQVAASFAAEGAVMSELKQWNDLYGEGGSRKKQQLTYFL 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi812g00001 818 Coils Coil 729 764 - -
Gabi812g00001 818 MobiDBLite consensus disorder prediction 427 477 - -
Gabi812g00001 818 MobiDBLite consensus disorder prediction 453 477 - -
Gabi812g00001 818 Gene3D - 677 780 - -
Gabi812g00001 818 ProSitePatterns AAA-protein family signature. 648 667 IPR003960 GO:0005524|GO:0016887
Gabi812g00001 818 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 48 817 - -
Gabi812g00001 818 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 504 679 - -
Gabi812g00001 818 Pfam ATPase family associated with various cellular activities (AAA) 545 675 IPR003959 GO:0005524|GO:0016887
Gabi812g00001 818 Gene3D - 504 785 IPR027417 -
Gabi812g00001 818 Pfam AAA+ lid domain 697 740 IPR041569 -
Gabi812g00001 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 736 IPR027417 -
Gabi812g00001 818 MobiDBLite consensus disorder prediction 740 762 - -
Gabi812g00001 818 SMART AAA_5 541 678 IPR003593 GO:0016887
Gabi812g00001 818 MobiDBLite consensus disorder prediction 427 452 - -
Gabi812g00001 818 MobiDBLite consensus disorder prediction 183 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi812g00001 Gabi-Chr812 53667 61470 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi812g00001 471 736 Calmodulin-binding Proteins AT3G56690 37.455 1.94e-43 168