Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi811g00004 ATGGCTTCTCTTGGAAATCCAAGAACTTGGATTCCATATATGAACAGCAAAGACTGTTCTCAAGGATTTTGTAGCTTGTACTGTCCACAGTGGTGTTACATAGTCTATCCTCCCCCACCGCCCTTTGAATACCCTGATGATGATTCAAGCCCAAAATTTTCCCCTCTTGTTATTGCAATCATTGGGATCTTGGCCACTGCTTTTCTTCTTGTAACTTACTATGCTATAATATCCAAGTACTGTGGCCACAGACAATCTGCACGCAGAGACAACCCTGACCCAAATGATGAATTGCAAGATAATCACAACCCCTCAATCCATGAACCCTGGCATGTTTCAACCACAGGCCTAGATGATGCTCTCATCAAGTCCATTGAAGTTTTTAAGTACAAAAAAGGTGAAGGTTTTGGTGGATTCACGGATTGTTCTGTTTGTCTCAGTGAGTTTCAAGACAATGAAATGGTCAAACTATTGCCAAAGTGCAACCATGTTTTTCATCCTCCTTGCATTGACACATGGCTCAAATCTCACTCTAGTTGCCCTCTTTGTCGTTCTAGCATATTCACTTTCAATGCTTCAGTGCTTCAGATTCCAGCCCAAGTGATAGAGCTCCCTTCAAGGAATGAAACTTCATCAGAAAATCAACATTCAAGTGAAAATGTAGCTGTTGGGAGTGGCAATGAATCTGGTGTGGTGGAAGAAGAAAGCATAATACATCATGGTAGAAGTGATCCGAAGCAAGAATTGCGTGCTTTTAGTGATTTGGGTAATTTGCAAGGCAGGCACGGAATAATTGAGATTAGAGAAGAAGGATATGAATCCATTAGAAGGTCAGTGTCTATGGATCATTCGTTTCATAGTGGTCTTTCAATTGCTAATGTTATTCATATAAATCAAGAGGAAGATTCTCAAGTAGAAGCTGGAACATCAAAGAGATTGCGAGGAGAAAGTAGCAAGTCAAGCTATAAAAGAAGGGTGTTGCATTGTGTATTGAGCCCAATTGCAATGAAGAGATCGTTTTCCAGTGGAAGTTTCTCACTTAGCAGAAGTGACAGAGGAAGACAGGGAATTATCCCTGTCTGA 1083 0.409 MASLGNPRTWIPYMNSKDCSQGFCSLYCPQWCYIVYPPPPPFEYPDDDSSPKFSPLVIAIIGILATAFLLVTYYAIISKYCGHRQSARRDNPDPNDELQDNHNPSIHEPWHVSTTGLDDALIKSIEVFKYKKGEGFGGFTDCSVCLSEFQDNEMVKLLPKCNHVFHPPCIDTWLKSHSSCPLCRSSIFTFNASVLQIPAQVIELPSRNETSSENQHSSENVAVGSGNESGVVEEESIIHHGRSDPKQELRAFSDLGNLQGRHGIIEIREEGYESIRRSVSMDHSFHSGLSIANVIHINQEEDSQVEAGTSKRLRGESSKSSYKRRVLHCVLSPIAMKRSFSSGSFSLSRSDRGRQGIIPV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi811g00004 360 MobiDBLite consensus disorder prediction 207 225 - -
Gabi811g00004 360 Pfam Ring finger domain 141 184 IPR001841 -
Gabi811g00004 360 MobiDBLite consensus disorder prediction 85 110 - -
Gabi811g00004 360 FunFam E3 ubiquitin-protein ligase ATL6 106 189 - -
Gabi811g00004 360 MobiDBLite consensus disorder prediction 85 104 - -
Gabi811g00004 360 CDD RING-H2_EL5-like 141 184 - -
Gabi811g00004 360 PANTHER RING-H2 FINGER PROTEIN ATL16 41 324 IPR044600 GO:0016567|GO:0016740
Gabi811g00004 360 SUPERFAMILY RING/U-box 123 190 - -
Gabi811g00004 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 191 IPR013083 -
Gabi811g00004 360 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Gabi811g00004 360 SMART ring_2 142 183 IPR001841 -
Gabi811g00004 360 MobiDBLite consensus disorder prediction 207 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi811g00004 Gabi-Chr811 89187 90269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi811g00004 1 320 C3H Transcription Factor Family AT3G03550 40.233 1.57e-66 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi811g00004 - - gmx:100792267 500.745