Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi80g00012 ATGGAGTTAACTCCAAGAGGAAGAAATCAAGGCCATGTCTTGAACTTTGATAGAGATGCAGATTCTTTTGTGGAGGAAGATAAGGAGCTTCTGTCAAAGTGGGCTGCTATAGAAAAATTACCCACTTTCAAACGAATTAAAACTTCTTTTGTTGATGTCAGTCAGGAAGAGACTGAAAGCAGTAGCAGCAAGGATGTGAGGTTGATGTTACAAAGCAGTAGCAGAAGGGTGGTTGATGTTACCAAGCTTGGAGCAGTTGAAAAGCGTTTGTTAATTGACAAGCTCATAAAGCACATTGAGAATGATAACCTCCAACTGCTGCAGAAACTAAGAGAAAGGATGGAAAGAGTTAATGTGAAGTTACCTAATGTGGAGGTCAAGTACAAGAACCTGAATGTAGAAGCAGAATGTGATGTTGTTCAAGGGAAGCCACTACCTACTCTATGGAACTCTCTTTTTAGCTTATTTTCAACTATATCCTGTAATTCTCAAGGAGCCAATATAAGCATTCTGAATGATGTCAGTGGCATCATAAAACCATCAAGGCTCACTCTTCTTCTTGGTCCACCAGGCTGTGGGAAAACGACCTTGTTAATGGCACTGGCCGGAAAACTAGACCAATCTCTCAAGGTCACTGGAGAAATCTCTTACAATGGTTGCAAGCTAGACGAATTTGTTCCTCAAAAAACATCAGCTTACATAAGCCAGTATGACCTGCACATTCCTGAGATGACAGTCAGAGAAACAATTGACTTTTCGGCACGCTGTCAGGGGGTTGGAAGCAGAGCTGATATAATGGCTGAAATCACTAGGAGAGAAATAGAAGAAGGAATCATCCCTGACCCAGATATTGACACCTATATGAAGGCAATTTCAGTTGAAGGACAAAGTGAAAATCTTCAAACAGAATATGTTTTAAAGATTCTCGGACTGGATATCTGTGCTGACACACTGGTTGGTGATGCACTAGATAGAGGCATTTCAGGTGGACAGAAGAAAAGGCTAACTACAGGAGAGATGATTGTGGGTCCAATAAAAGCTCTTTTTATGGATGAAATATCAACTGGTTTGGACAGCTCCACAACCTTTCAAATAGTTACATGTCTCCAGCAATTGGTGCACATCACAGATGCAACTGCAGTGCTTTCACTTCTTCAACCAGCACCAGAAACCTTTGAGTTATTTGATGATCTTATATTGATGGCAGAGGGGAAGATAGTATACCATGGCCCCTGCAGTCAAGCACTCCAATTTTTCAAGGATTGTGGTTTCTGGTGTCCAGAAAGAAAAGGAGTGGCAGACTTTCTTCAAGAGGTAATCTCTAAGAAGGATCAAAGGCAATACTGGTACCGCACAGATGTTCCTTACAATTATGTTTCAGTAGATGAGTTCTGTCAAATCTTCAAAACAAGTTATTGGGGACGGATGTTAGATGATGAGCTCTCACAGCCATATGATAAATCACAATCCCATATAAATCCTTTATCATTTAGCAAGTACTCCTTGGGAAAATGGGAATTGTTTAAAGCTTGTATGAGGAGAGAACTTCTCCTCATGAGACGAAACTCATTTATCTATATATTTAAAACTGTACAGCTTACAATCACTGCAATCATAACAATGACAGTGTTCTTACGTACTCAGTCGGCTGTGGACTTGATAGGTGCAAACTATTTATTGGGATCATTGTACTACACACTTGTTCGCCTCATGACTAATGGAGTTGCTGAGTTAATCATGACTATTACTAGACTCCCTGTTGTTTATAAGCAGAAGGCATTTTATCTTTATCCAGCTTGGGCTTACTGTCTTCCAGCTTCCATTCTAAAGATTCCATTTTCAGTTCTTGATTCTATTGTTTGGACATCAGTGACATATTATGTTATAGGCTACAGCCCTGAAATAACAAGGTTCTTGCGCCAGTTTCTTTTGCTTGTCACTTTGCATATGTCATCAACCTCCATGTGTCGTTGCCTTGCCTCAGTTTTCAAAACTGATGTTGCAGCTACAACTGTTGGTTCCTTGGTATTAGTACTGATGTTCTTGTTTGGAGGCTTTATTCTTCCTCGACCATCATTGCCATGGTGGTTGAGGTGGGGTTTTTGGCTTTCTCCCATGACATATGGGGAAATAGGAATAACACTGAATGAATTTCTTGCTCCTCGCTGGCAGAAGATCCAAGAGGGAAACATCACCATAGGAAGGGAGGTTCTTAGTAGTCGTGGTTTAGACTTTGATAGCAACTTCTACTGGCTATCAGTTGGAGTCTTACTTGGTTTCACAGTTCTATTTGATTTTGGATTTATCTTGGCATTAACATACTTAAAAGGTAAGTCTTATCTAAGTTATTACAAGGAAAAAAAAATCAAAGAATTTTTTTATTTTGCTCAATCCATTGATTTGATGGGAAATGTATTTCAGAGCCCAAGACATCTAGAGCTTTATTTCAAACAAATAGTAAGAAAAATTGGTATCTTTTGCATGGTTGTTCATACAGGGAAAATGGTCCTGCCCTTTGAGCCACTGACAATAACATTTAAGGATGTCCAGTATTTTGTTGACACCCCTCCGGAGATGAAAAAACATGGTTCCAATGAGAAAAAACTACAATTGCTCCGTGATATCACAGGAGCCTTCAGGCCAGGAATACTTAGTGCACTGATGGGAGTCAGTGGAGCAGGGAAAACAACTCTCATGGATGTCCTTTCAGGAAGAAAAACTGGAGGTATCATTGAAGGAGATATAAGAATTGGTGGATACCCCAAAGTGCAGAAGACATTTGCAAGAGTTTCAGGTTACTGTGAACAGAACGACATACATTCTCCATATATAACAGTTGAAGAATCTGTCACGTACTCAGCTTGGTTGCGGTTGCCTACAGAGATTGATTCAGTCACAAAAGGGAAATTTGTTGAAGAAGTCCTTGAAACAATTGAACTTGATGATATAAAGGATTGTTTAGTTGGCATCCCAGGCCAAAGTGGCTTATCTACCGAACAACGTAAAAGACTAACCATTGCCGTGGAGCTTGTTTCCAATCCATCAATAATCTTTATGGATGAACCTACATCAGGTTTGGATGCCCGAGCAGCTGCAGTTGTTATGCGTGCAGTGAAGAATGTTGTTGCCACTGGTAGGACCACGGTTTGCACTATACATCAACCAAGCATTGACATATTTGAGACTTTTGATGAGTTGATTCTCATGAAATCTGGAGGACAGATTATTTACAGTGGAATGCTAGGTCATCATTCAAGTAGACTAATTGAATATTTTCAGAATATACCTGGAGTGCCAAAGATCAAGGACAATTATAATCCTGCAACTTGGATGTTGGAAGCTACCTCTGCATCTGTAGAACAAGAACTTAAAATAGATTTTGCAGAAATCTATAAAGAGTCACACCTTCACCGGGATACCCTTGAATTGGTGAGAGAGCTAAGTGAACCACAGCCAGATTCAAGAGACTTACACTTCTCAACTCGCTTCCCTCAAAGTACCTTGGGGCAGTTTATGGCATGCCTATGGAAGCAACACTTGTCCTATTGGAGAAGTCCTGAGTACAACTTAATACGTTTCGTGTTCATGGTTGTTGCAGCAATAATATTTGGGGCAGTATTTTGGCAGAAAGGGAAAGAAATAAACAATCAGCAGGATTTGTTCAACGTACTTGGATCAATGTATATTGCTGTAATATTCTTGGGCATAAATTACTGTTCAACAATTCTACCATACGTGGCAACTGAGCGCAGTGTTTTGTATCGAGAAAAGTTTGCGGGAATGTATTCTTCCATGGCTTATTCATTTGCACAGGTGGCCATTGAAATACCATATATCTTAGTGCAAGCAATTTTATATGTGGCTATCACATATCCAATGATAGGTTTCCATTGGTCAGTTCAGAAAGTCTTTTGGTATTTCTACACCACATTCTGTACATTTTTATACTTCACATATCTGGGAATGCTGATAATGTCATTGAGCTCAAATCTGGACATAGCTTCGGTATTGTCAACTGCAGTCTACACCATATTCAATCTCTTTTCTGGATTCCTCATGCCAGGACCGAAAATTCCTAAATGGTGGGTTTGGTGCTACTGGATTTGCCCTACAGCTTGGTCCCTGAATGGCCTCCTAACTTCACAATATGGAGACATGGACAAGGAGATACTCATATTTGGGGAGCAAAAACCAGTTGGTTCCTTTCTAAAAGATTACTACGGATTTCGGCATGACAGATTAAGCATTGTGGCCGTGGTGCTCATTGCTTTTCCAATCATTTATGCCTCTCTCTTTGCCTATTGCATTGGGAAAATGAATTTCCAAAAGAGATAA 4335 0.3998 MELTPRGRNQGHVLNFDRDADSFVEEDKELLSKWAAIEKLPTFKRIKTSFVDVSQEETESSSSKDVRLMLQSSSRRVVDVTKLGAVEKRLLIDKLIKHIENDNLQLLQKLRERMERVNVKLPNVEVKYKNLNVEAECDVVQGKPLPTLWNSLFSLFSTISCNSQGANISILNDVSGIIKPSRLTLLLGPPGCGKTTLLMALAGKLDQSLKVTGEISYNGCKLDEFVPQKTSAYISQYDLHIPEMTVRETIDFSARCQGVGSRADIMAEITRREIEEGIIPDPDIDTYMKAISVEGQSENLQTEYVLKILGLDICADTLVGDALDRGISGGQKKRLTTGEMIVGPIKALFMDEISTGLDSSTTFQIVTCLQQLVHITDATAVLSLLQPAPETFELFDDLILMAEGKIVYHGPCSQALQFFKDCGFWCPERKGVADFLQEVISKKDQRQYWYRTDVPYNYVSVDEFCQIFKTSYWGRMLDDELSQPYDKSQSHINPLSFSKYSLGKWELFKACMRRELLLMRRNSFIYIFKTVQLTITAIITMTVFLRTQSAVDLIGANYLLGSLYYTLVRLMTNGVAELIMTITRLPVVYKQKAFYLYPAWAYCLPASILKIPFSVLDSIVWTSVTYYVIGYSPEITRFLRQFLLLVTLHMSSTSMCRCLASVFKTDVAATTVGSLVLVLMFLFGGFILPRPSLPWWLRWGFWLSPMTYGEIGITLNEFLAPRWQKIQEGNITIGREVLSSRGLDFDSNFYWLSVGVLLGFTVLFDFGFILALTYLKGKSYLSYYKEKKIKEFFYFAQSIDLMGNVFQSPRHLELYFKQIVRKIGIFCMVVHTGKMVLPFEPLTITFKDVQYFVDTPPEMKKHGSNEKKLQLLRDITGAFRPGILSALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQKTFARVSGYCEQNDIHSPYITVEESVTYSAWLRLPTEIDSVTKGKFVEEVLETIELDDIKDCLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAVVMRAVKNVVATGRTTVCTIHQPSIDIFETFDELILMKSGGQIIYSGMLGHHSSRLIEYFQNIPGVPKIKDNYNPATWMLEATSASVEQELKIDFAEIYKESHLHRDTLELVRELSEPQPDSRDLHFSTRFPQSTLGQFMACLWKQHLSYWRSPEYNLIRFVFMVVAAIIFGAVFWQKGKEINNQQDLFNVLGSMYIAVIFLGINYCSTILPYVATERSVLYREKFAGMYSSMAYSFAQVAIEIPYILVQAILYVAITYPMIGFHWSVQKVFWYFYTTFCTFLYFTYLGMLIMSLSSNLDIASVLSTAVYTIFNLFSGFLMPGPKIPKWWVWCYWICPTAWSLNGLLTSQYGDMDKEILIFGEQKPVGSFLKDYYGFRHDRLSIVAVVLIAFPIIYASLFAYCIGKMNFQKR 1444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi80g00012 1444 Gene3D - 858 1090 IPR027417 -
Gabi80g00012 1444 Pfam ABC-transporter N-terminal 99 150 IPR029481 -
Gabi80g00012 1444 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 868 1079 IPR027417 -
Gabi80g00012 1444 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 150 428 IPR003439 GO:0005524
Gabi80g00012 1444 FunFam ABC transporter G family member 34 158 462 - -
Gabi80g00012 1444 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 428 IPR027417 -
Gabi80g00012 1444 Pfam ABC-2 type transporter 386 440 IPR043926 GO:0140359
Gabi80g00012 1444 Pfam ABC-2 type transporter 1053 1121 IPR043926 GO:0140359
Gabi80g00012 1444 Pfam ABC-2 type transporter 1170 1382 IPR013525 GO:0016020|GO:0140359
Gabi80g00012 1444 Pfam ABC-2 type transporter 507 718 IPR013525 GO:0016020|GO:0140359
Gabi80g00012 1444 CDD ABCG_PDR_domain2 841 1079 IPR034003 -
Gabi80g00012 1444 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 22 1444 - -
Gabi80g00012 1444 Coils Coil 107 127 - -
Gabi80g00012 1444 FunFam ABC transporter G family member 34 858 1090 - -
Gabi80g00012 1444 Pfam Plant PDR ABC transporter associated 723 776 IPR013581 -
Gabi80g00012 1444 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 844 1097 IPR003439 GO:0005524
Gabi80g00012 1444 Pfam ABC transporter 872 1024 IPR003439 GO:0005524
Gabi80g00012 1444 Gene3D - 155 421 IPR027417 -
Gabi80g00012 1444 Pfam ABC transporter 171 353 IPR003439 GO:0005524
Gabi80g00012 1444 SMART AAA_5 180 413 IPR003593 GO:0016887
Gabi80g00012 1444 SMART AAA_5 881 1073 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi80g00012 Gabi-Chr80 86239 96442 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi80g00012 869 1056 Calmodulin-binding Proteins AT2G36910 28.571 4.05e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi80g00012 K08711 - gmx:100779615 2469.5