Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi80g00007 ATGAAGGGTGTTGAGAATGGGAAGAGAAGTTTGGAATGGGATTTGAATGATTGGAAATGGGATGGTGATCTTTTCACTGCTCAACCACTCAATTCAGTGCCATCAGATTGTAGGAGTCGCCAGTTACCCCCAAATCATCCTGAAATTCCTGCAAAAATTGCTAATCCATGTATCAACTCAGAGGAAGGAAAGAGAGAATTGGAGAAAAGGAGGAGAGGTGTTATAGATGAAGGTGGTTCTCTTAATTTGAACCTTGGGGGTCAAGTTTACCCTGTCATGGTGGAAGAGGAGGAAAAAAGTGGAAAGAAGACAAAGGTAATTGGGACTTCTACATCTAACCGTGATGTTTGTCAGGTGCAAGATTGCGGTGCTGATCTTTGTAATGCCAAGGATTACCACAGGAGGCACAAGGTTTGTGATATGCATTCTAAGGCTACTATGGCACTAGTTGGAAATGTTATGCAGCGTTTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGTAAGAGAAGTTGTCGTAGGCGTCTGGCAGGCCACAATAAGAGGAGGAGGAGGAGAACTCATCCTGATGCTACTCTAGTTAATGGAGATTCTGTGAACGATGAAAGGGGCAGTAGCTATCTGTTAACGACGCTGATACGAATACTGTCCAATATGCACTCAAACGACTCAGATCATACAAGGAACCAGGATATTATCTCTCATCTGCTTAGGAACCTAGCAAGTCTGGCTGGTACAATTAATGGAAGAAGTGTAGCCTCCTTACCGGAGGGATCTCAAGGTGTGGTAAATGCTGGGACACCTGGAGCTGTGCATCCAGAAACCTCCAGGCCTTCCGGTTCGTCCATCAAGACAGATAATGGCTTCATCTGTCAGGACCCTCCAAAGTCTGTGGCACAATGTGAGGCAGTGCCTGCTTATGGTATGACACAAAAATGTATACCTTCAGGTGATGGTAGAGTAGGAAATTGCAAACCTCCTTCGGGAGCACAACCCTCGAATGTACTTCTATCAAGGGATAGCCTTCCATCCCAATTAATTGCGGCAGAGACTACAGTTGGAAGGGACAACTTAAATAACATTGACCTGAATAATGTATATGATGATATACAGAATAGTGTTGAAAATTCTAAGAAGTCTTATCCTCCTGTGGCTTCAAAGATTGGATCTATTGATCCTCCTTTGTGGTTGCAATCTGACTCTCTCAAGTCAAGTCCACAACTGACTAGTAGAAATTCAGATTCAACCTCTACCCAATCACCATACAGTTCCAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTTAAACTCTTCGGCAAGGATCCAAATGATTTTCCCCTTGTTCTCCGATCGCAGATCCTCAACTGGTTATCCCACAGTCCCACAGAGATAGAGAGCTATATAAGGCCAGGCTGTATCTTGTTAACAATATATCTCCGTCTGGAAAAGTCTGCATGGGAGGAGCTCTGCTGTAACCTAGGATCCAGCTTGAGAAAGCTTCTTGCTGCATCAAATGATTCTTTTTGGAGAACAGGATGGGTATATGCAAGGGTGCGGCACTCTGTAGCTTTTCTGTATAATGGTCAGGTTATCTTGGATGTGCCCTGGCATTTTAAAAGCCCACAAAATTTTAGGATTTCATGCATTAAACCACTTGCTGTTCCTGCAAGTGCAAGTTCTCAATTTATTGTGAAAGGATTCAACCTTTTGCGGTCTAGCACAAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTAGATGATAGTTGTCATGATTTGATTGGTGGAGCTGATGCAGCCATTCAGCATCTCAGCTTCTCTTGTCATATACCCAATGTAACTGGGAGGGGATTTATTGAGGTGGAAGATCATGGCTTTAGCAGCTGTTCCTTTCCATTTATAGTTGCAGAGCAAGAAGTTTGTTCAGAGATCTGCAAGCTGGAGAATGTGATTGAGGCAGCTGAGACCACTGATGACATCCAGATAAAAAACAAACTAATGGAAGAAAAGACTCGAGCTTTGAATTTCTTACAAGAAATGGGTTGGCTCCTGCATAGAAGTCATGTGAAAGTTAGGCTAGGTCCCATGGCTCCTATCCATGATCTCTTGCATTTCAATCGGTTCATGTGGCTTGCTGACTTCTCCATGGACCATGGTTTGTGTGCTGTGATGAAAAAACTTTTGGACATTATATTTGAGGGCGGTGTTCATGCAGGAGAGCATACCTCCATTGAGCTTGCATTGTTAGACGCGGGCCTTTTACATGGAGCTGTAAAGAGAAATTGTAGGCCTATAGTGGAACTACTGTTAAAATATGCCCCAATTAAAACTTCAGATGGTGCAGATTGTAAAGTGAAGCAAGTTGACAAGGCCCCTGATGGATTCGTATTTAGACCTGATACTGTTGGCCCCGGTGGGTTGACTCCCCTTCATGTTGCAGCAAGTATGAGTGGCTCGGAGAATGTGTTGGATGCGTTAACTGATGATCCGGGAATGATAGGAATTGAAGCATGGAAAAGTACCCGGGACAGTACAGGTTTAACACCCAACGACTATGCATGCATAAGGGGATATTACTCCTACATTCAACTTGTCCAGAGGAAGACCTGCAAAAAACGTGAAAGACAACATGTGCTTGATATCCCTGGTAGTACCCTTGTAGACAGTAACACAAAGCAGAAGCAATCAGATGGGCATAGGACATCTAAAGTTTCAAGTTTTCAGACGGAGAAGATTGAAACCACAGCAATGCCACCACGTCAATGTAGGCTATGCCAGCACAAGGTGGCTTATGGAGGCATGAGAACAGCACTGGTTTATAGGCCAGTCATGCTCTCAATGGTGACCATAGCAGCAGTCTGTGTCTGTGTGGCTTTACTCTTCAAAAGCTCACCTAGAATTTCCTATGCGTTCCAGCCCTTCAACTGGGACTCATTGGAGTACGGGGCAATCTAA 2976 0.4405 MKGVENGKRSLEWDLNDWKWDGDLFTAQPLNSVPSDCRSRQLPPNHPEIPAKIANPCINSEEGKRELEKRRRGVIDEGGSLNLNLGGQVYPVMVEEEEKSGKKTKVIGTSTSNRDVCQVQDCGADLCNAKDYHRRHKVCDMHSKATMALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRRRTHPDATLVNGDSVNDERGSSYLLTTLIRILSNMHSNDSDHTRNQDIISHLLRNLASLAGTINGRSVASLPEGSQGVVNAGTPGAVHPETSRPSGSSIKTDNGFICQDPPKSVAQCEAVPAYGMTQKCIPSGDGRVGNCKPPSGAQPSNVLLSRDSLPSQLIAAETTVGRDNLNNIDLNNVYDDIQNSVENSKKSYPPVASKIGSIDPPLWLQSDSLKSSPQLTSRNSDSTSTQSPYSSSGEAQSRTDRIVFKLFGKDPNDFPLVLRSQILNWLSHSPTEIESYIRPGCILLTIYLRLEKSAWEELCCNLGSSLRKLLAASNDSFWRTGWVYARVRHSVAFLYNGQVILDVPWHFKSPQNFRISCIKPLAVPASASSQFIVKGFNLLRSSTRLLCALEGKYLVDDSCHDLIGGADAAIQHLSFSCHIPNVTGRGFIEVEDHGFSSCSFPFIVAEQEVCSEICKLENVIEAAETTDDIQIKNKLMEEKTRALNFLQEMGWLLHRSHVKVRLGPMAPIHDLLHFNRFMWLADFSMDHGLCAVMKKLLDIIFEGGVHAGEHTSIELALLDAGLLHGAVKRNCRPIVELLLKYAPIKTSDGADCKVKQVDKAPDGFVFRPDTVGPGGLTPLHVAASMSGSENVLDALTDDPGMIGIEAWKSTRDSTGLTPNDYACIRGYYSYIQLVQRKTCKKRERQHVLDIPGSTLVDSNTKQKQSDGHRTSKVSSFQTEKIETTAMPPRQCRLCQHKVAYGGMRTALVYRPVMLSMVTIAAVCVCVALLFKSSPRISYAFQPFNWDSLEYGAI 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi80g00007 991 Gene3D - 751 889 IPR036770 -
Gabi80g00007 991 SUPERFAMILY Ankyrin repeat 759 871 IPR036770 -
Gabi80g00007 991 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 75 871 IPR044817 GO:0003677
Gabi80g00007 991 MobiDBLite consensus disorder prediction 181 203 - -
Gabi80g00007 991 MobiDBLite consensus disorder prediction 892 917 - -
Gabi80g00007 991 Pfam SBP domain 117 190 IPR004333 GO:0003677
Gabi80g00007 991 ProSiteProfiles Zinc finger SBP-type profile. 114 191 IPR004333 GO:0003677
Gabi80g00007 991 Gene3D - 108 178 IPR036893 GO:0003677|GO:0005634
Gabi80g00007 991 SUPERFAMILY SBT domain 116 193 IPR036893 GO:0003677|GO:0005634
Gabi80g00007 991 MobiDBLite consensus disorder prediction 407 434 - -
Gabi80g00007 991 FunFam Squamosa promoter-binding-like protein 14 108 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi80g00007 Gabi-Chr80 60534 67961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi80g00007 6 990 SBP-box Gene Family AT3G60030 45.887 0.0 765
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi80g00007 SBP 1.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi80g00007 - - gsj:114419913 1568.9