Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi80g00003 ATGGCATCTGATCTGAGTTCAGGGTTGTCCAAGAAAACTATTGTTTTTGGGTTGCAAGCGTGGGAATTAATGGGGATAATAGTTGGTTTGTTCATTATAATCATTCTTGTGGTGCTATCAATATGTCTTACTTCAAGAAAAAAATCCAGAAGAGTTAAGGGCATGGTTCCCCTTAGCCATATGTTATCTGTTTCAGAAGAGATCAAAGAGATTAGAGTTGATCAAGTTTCAGCAAATGATCGTCCCCAGAATGGTGCTTTTATGAGTCTGTATGACAAGTTCAGTGACAGGGATTCTGAAAAGGTTTTGATCCAAACAACAAATGGGGAAAATAGCAGCCAATCAGGCTCATTTATTCATGTTGAGAAAGACACTGCTGGCTCTCAATCCGGTGAAGAAAGTGGTCCAAAGTCTATTTCTGCTTTCAGGTCTTCTTTGCATCCTATAACTGCACCATCGCCTTTGTCTGGTCTGCCTGAATTCTCTCACCTTGGCTGGGGGCACTGGTTTACATTAAGAGACCTAGAACTTGCAACAAACAGGTTTTCAAAAGACAATATCATTGGGGAAGGTGGATATGGAGTTGTTTATCAAGGCCAGCTAATCAATGGGAGTCCTGTGGCTGTTAAGAAGCTACTCAATAATCTAGGACAAGCTGAAAAGGAATTCAGAGTGGAAGTTGAGGCTATTGGTCATGTGCGGCACAAGAACTTGGTGAGACTATTGGGCTATTGCATTGAAGGCACTCACAGGTTGTTGGTTTATGAGTATGTTAACAATGGAAATTTAGAGCAATGGCTTCATGGAGCCATGCGACAGTATGGTTTTCTTACTTGGGATGCTAGGATTAAAATTCTTCTTGGAACAGCTAAAGCGCTGGCTTACTTGCATGAGGCAATTGAGCCAAAAGTTGTACATCGAGATATTAAGTCAAGCAATATTCTAATTGATGATGACTTCAATGCCAAAATATCTGACTTTGGGTTGGCTAAGTTACTGGGTGCTGGAAAAAGTCATATTACAACTCGAGTAATGGGTACTTTTGGATATGTGGCTCCAGAATACGCCAATTCAGGCTTACTAAACGAGAAGAGTGATGTTTATAGCTATGGGGTATTGCTCCTTGAAGCAATTACTGGAAGAGACCCAGTGGATTATAGCCGACCAGCAGCTGAGGTAAATTTGGTTGACTGGCTCAAGATGATGGTGGGGAACAGGCGCGCAGAAGAGGTGGTGGACCCTAACATTGAGACCAGACCATCAACAAGTGCCCTTAAACGAGCCCTTTTGACTGCTTTGAGGTGTGTTGATCCAGATTCTGAGAAAAGACCAAAGATGAGTCAAGTTGTCCGCATGCTTGAATCAGAGGAATATCCCATACCTAGAGAGGATCGTAGACGCCGAAAGAGTCAGGCAGGAAATATAGAGCTGGAGGAGGCCCAGAAGGAGACTTTTGATACAGAAAAGAGTGATGTTCCAGATTCTAAGTCCAATGGCAGAAGGAACCAACGGAAGTAG 1518 0.4262 MASDLSSGLSKKTIVFGLQAWELMGIIVGLFIIIILVVLSICLTSRKKSRRVKGMVPLSHMLSVSEEIKEIRVDQVSANDRPQNGAFMSLYDKFSDRDSEKVLIQTTNGENSSQSGSFIHVEKDTAGSQSGEESGPKSISAFRSSLHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKDNIIGEGGYGVVYQGQLINGSPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMRQYGFLTWDARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSYGVLLLEAITGRDPVDYSRPAAEVNLVDWLKMMVGNRRAEEVVDPNIETRPSTSALKRALLTALRCVDPDSEKRPKMSQVVRMLESEEYPIPREDRRRRKSQAGNIELEEAQKETFDTEKSDVPDSKSNGRRNQRK 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi80g00003 505 Gene3D Phosphorylase Kinase; domain 1 164 257 - -
Gabi80g00003 505 SMART serkin_6 182 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi80g00003 505 ProSiteProfiles Protein kinase domain profile. 182 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi80g00003 505 CDD STKc_IRAK 188 454 - -
Gabi80g00003 505 ProSitePatterns Protein kinases ATP-binding region signature. 188 211 IPR017441 GO:0005524
Gabi80g00003 505 Pfam Protein kinase domain 183 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi80g00003 505 FunFam Putative receptor-like protein kinase 164 257 - -
Gabi80g00003 505 PANTHER OS01G0323000 PROTEIN 5 479 - -
Gabi80g00003 505 FunFam Putative receptor-like serine/threonine-protein kinase 258 469 - -
Gabi80g00003 505 MobiDBLite consensus disorder prediction 440 505 - -
Gabi80g00003 505 MobiDBLite consensus disorder prediction 107 140 - -
Gabi80g00003 505 Gene3D Transferase(Phosphotransferase) domain 1 258 470 - -
Gabi80g00003 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Gabi80g00003 505 SUPERFAMILY Protein kinase-like (PK-like) 166 461 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi80g00003 Gabi-Chr80 28884 34971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi80g00003 17 456 Trihelix Transcription Factor Family AT1G70460 40.449 1.65e-94 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Gabi80g00003 Pkinase 3.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi80g00003 - - gmx:100793499 901.738