Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi805g00006 ATGGAAGGCATTCCTCACCCAATTCCCAGAACAGTTGAGGAGGTTTTCACTGACTTTCAGGGTAGACGAGCTGGATTGATTATGGCCCTTACTACTGACGTTGAAAAGTTTTACCAGCAGTGCGGTCCTGAGAAGGAGAACTTGTGTCTATATGGATTTCCAAATGAAACATGGGAAGTCAATTTACCTGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCAGCATTAGGTATAAACTTCGCCAGGGACGGGATGCAAGAGAAAGACTGGTTATCACTGGTAGCAGTTCATAGTGACTCATGGCTTCTTGCTGTTGCTTTCTATTTTGGTGCCAGATTTGGATTCGGTAAGACTGAAAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCAACCATCTTCGAAGTTGTAACAGGAAGTGCTAAGCAATCAAAGGATCAATCAGCTGCTCACAACAATGGCAGCAAAAGCAAAGCATGTGGAAAGGCCAAGGGAGTGAAGATGTCTGCACCACTCAAAGAAGAGGATGAGAGTGGAGAAGAAGAAGAAGATGACGAACAAGGTGCAACATGTGGGGCTTGTGGTGATAATTATGCCAGTGATGAGTTTTGGATATGTTGTGATATGTGTGAGAGATGGTTCCATGGTAAATGTGTTAAAATCACTCCTGCTAAGGCTGAGCACATCAAACAATACAAGTGCCCAAGTTGCAGTAACAAGAGAACTAGAGTTTAG 735 0.4367 MEGIPHPIPRTVEEVFTDFQGRRAGLIMALTTDVEKFYQQCGPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTERKRLFQMINDLPTIFEVVTGSAKQSKDQSAAHNNGSKSKACGKAKGVKMSAPLKEEDESGEEEEDDEQGATCGACGDNYASDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRTRV 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi805g00006 244 SUPERFAMILY FYVE/PHD zinc finger 180 241 IPR011011 -
Gabi805g00006 244 ProSitePatterns Zinc finger PHD-type signature. 191 237 IPR019786 -
Gabi805g00006 244 ProSiteProfiles Zinc finger PHD-type profile. 188 240 IPR019787 -
Gabi805g00006 244 FunFam PHD finger alfin-like protein 183 239 - -
Gabi805g00006 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 239 IPR013083 -
Gabi805g00006 244 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Gabi805g00006 244 PANTHER CPG BINDING PROTEIN 9 243 IPR045104 GO:0006355|GO:0042393
Gabi805g00006 244 SMART PHD_3 190 238 IPR001965 -
Gabi805g00006 244 MobiDBLite consensus disorder prediction 175 189 - -
Gabi805g00006 244 CDD PHD_AL_plant 191 240 IPR044104 -
Gabi805g00006 244 Pfam PHD-finger 191 240 IPR019787 -
Gabi805g00006 244 MobiDBLite consensus disorder prediction 144 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi805g00006 Gabi-Chr805 8298 17508 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi805g00006 1 241 Alfin-like Transcription Factor Family AT1G14510 79.435 1.93e-128 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi805g00006 Alfin 1.2e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi805g00006 K26274 - gmx:100170698 436.802