Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi805g00005 ATGGAAGGCATTCCTCACCCAATTCCCAGAACAGTTGAGGAGGTTTTCACTGACTTTCAGGGTAGACGAGCTGGATTGATTATGGCCCTTACTACTGACGTTGAAAAGTTTTACCAGCAGTGCGGTCCTGAGAAGGAGAACTTGTGTCTATATGGATTTCCAAATGAAACATGGGAAGTCAATTTACCTGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCAGCATTAGGTATAAACTTCGCCAGGGACGGGATGCAAGAGAAAGACTGGTTATCACTGGTAGCAGTTCATAGTGACTCATGGCTTCTTGCTGTTGCTTTCTATTTTGGTGCCAGATTTGGATTCGGTAAGACTGAAAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCAACCATCTTCGAAGTTGTAACAGGAAGTGCTAAGCAATCAAAGGATCAATCAGCTGCTCACAACAATGGCAGCAAAAGCAAAGCATGTGGAAAGTCTCAGGCCAAGGGAGTGAAGATGTCTGCACCACTCAAAGAAGAGGATGAGAGTGGAGAAGAAGAAGAAGATGACGAACAAGGTGCAACATGTGGGGCTTGTGGTGATAATTATGCCAGTGATGAGTTTTGGATATGTTGTGATATGTGTGAGAGATGGTTCCATGGTAAATGTGTTAAAATCACTCCTGCTAAGGCTGAGCACATCAAACAATACAAGTGCCCAAGTTGCAGTAACAAGAGAACTAGAGTTTAG 741 0.4372 MEGIPHPIPRTVEEVFTDFQGRRAGLIMALTTDVEKFYQQCGPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTERKRLFQMINDLPTIFEVVTGSAKQSKDQSAAHNNGSKSKACGKSQAKGVKMSAPLKEEDESGEEEEDDEQGATCGACGDNYASDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRTRV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi805g00005 246 MobiDBLite consensus disorder prediction 144 191 - -
Gabi805g00005 246 Pfam PHD-finger 193 242 IPR019787 -
Gabi805g00005 246 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Gabi805g00005 246 MobiDBLite consensus disorder prediction 177 191 - -
Gabi805g00005 246 CDD PHD_AL_plant 193 242 IPR044104 -
Gabi805g00005 246 PANTHER CPG BINDING PROTEIN 9 245 IPR045104 GO:0006355|GO:0042393
Gabi805g00005 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 241 IPR013083 -
Gabi805g00005 246 MobiDBLite consensus disorder prediction 144 160 - -
Gabi805g00005 246 FunFam PHD finger alfin-like protein 185 241 - -
Gabi805g00005 246 SUPERFAMILY FYVE/PHD zinc finger 182 243 IPR011011 -
Gabi805g00005 246 ProSiteProfiles Zinc finger PHD-type profile. 190 242 IPR019787 -
Gabi805g00005 246 SMART PHD_3 192 240 IPR001965 -
Gabi805g00005 246 ProSitePatterns Zinc finger PHD-type signature. 193 239 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi805g00005 Gabi-Chr805 8298 17508 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi805g00005 1 243 Alfin-like Transcription Factor Family AT1G14510 79.839 1.05e-129 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi805g00005 Alfin 1.2e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi805g00005 K26274 - gmx:100170698 450.284