Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi805g00003 ATGGAAGGCATTCCTCACCCAATTCCCAGAACAGTTGAGGAGGTTTTCACTGACTTTCAGGGTAGACGAGCTGGATTGATTATGGCCCTTACTACTGACGTTGAAAAGTTTTACCAGCAGTGCGGTCCTGAGAAGGAGAACTTGTGTCTATATGGATTTCCAAATGAAACATGGGAAGTCAATTTACCTGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCAGCATTAGGTATAAACTTCGCCAGGGACGGGATGCAAGAGAAAGACTGGTTATCACTGGTAGCAGTTCATAGTGACTCATGGCTTCTTGCTGTTGCTTTCTATTTTGGTGCCAGATTTGGATTCGGTAAGACTGAAAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCAACCATCTTCGAAGTTGTAACAGGAAGTGCTAAGCAATCAAAGGATCAATCAGCTGCTCACAACAATGGCAGCAAAAGCAAAGCATGTGGAAAGGTGTCTCAGGCCAAGGGAGTGAAGATGTCTGCACCACTCAAAGAAGAGGATGAGAGTGGAGAAGAAGAAGAAGATGACGAACAAGGTGCAACATGTGGGGCTTGTGGTGATAATTATGCCAGTGATGAGTTTTGGATATGTTGTGATATGTGTGAGAGATGGTTCCATGGTAAATGTGTTAAAATCACTCCTGCTAAGGCTGAGCACATCAAACAATACAAGTGCCCAAGTTGCAGTAACAAGAGAACTAGAGTTTAG 744 0.4382 MEGIPHPIPRTVEEVFTDFQGRRAGLIMALTTDVEKFYQQCGPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTERKRLFQMINDLPTIFEVVTGSAKQSKDQSAAHNNGSKSKACGKVSQAKGVKMSAPLKEEDESGEEEEDDEQGATCGACGDNYASDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRTRV 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi805g00003 247 MobiDBLite consensus disorder prediction 178 192 - -
Gabi805g00003 247 Pfam PHD-finger 194 243 IPR019787 -
Gabi805g00003 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 242 IPR013083 -
Gabi805g00003 247 SMART PHD_3 193 241 IPR001965 -
Gabi805g00003 247 FunFam PHD finger alfin-like protein 186 242 - -
Gabi805g00003 247 ProSiteProfiles Zinc finger PHD-type profile. 191 243 IPR019787 -
Gabi805g00003 247 CDD PHD_AL_plant 194 243 IPR044104 -
Gabi805g00003 247 MobiDBLite consensus disorder prediction 144 192 - -
Gabi805g00003 247 MobiDBLite consensus disorder prediction 144 160 - -
Gabi805g00003 247 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Gabi805g00003 247 ProSitePatterns Zinc finger PHD-type signature. 194 240 IPR019786 -
Gabi805g00003 247 SUPERFAMILY FYVE/PHD zinc finger 183 244 IPR011011 -
Gabi805g00003 247 PANTHER CPG BINDING PROTEIN 9 246 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi805g00003 Gabi-Chr805 8298 17508 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi805g00003 1 244 Alfin-like Transcription Factor Family AT1G14510 80.242 3.33e-129 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi805g00003 Alfin 1.2e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi805g00003 K26274 - gmx:100170698 449.899