Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi805g00002 ATGGAAGGCATTCCTCACCCAATTCCCAGAACAGTTGAGGAGGTTTTCACTGACTTTCAGGGTAGACGAGCTGGATTGATTATGGCCCTTACTACTGACGTTGAAAAGTTTTACCAGCAGTGCGGTCCTGAGAAGGAGAACTTGTGTCTATATGGATTTCCAAATGAAACATGGGAAGTCAATTTACCTGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCAGCATTAGGTATAAACTTCGCCAGGGACGGGATGCAAGAGAAAGACTGGTTATCACTGGTAGCAGTTCATAGTGACTCATGGCTTCTTGCTGTTGCTTTCTATTTTGGTGCCAGATTTGGATTCGGTAAGACTGAAAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCAACCATCTTCGAAGTTGTAACAGGAAGTGCTAAGCAATCAAAGGATCAATCAGCTGCTCACAACAATGGCAGCAAAAGCAAAGCATGTGGAAAGGTGGTATTGAAGATGTCTGCACCACTCAAAGAAGAGGATGAGAGTGGAGAAGAAGAAGAAGATGACGAACAAGGTGCAACATGTGGGGCTTGTGGTGATAATTATGCCAGTGATGAGTTTTGGATATGTTGTGATATGTGTGAGAGATGGTTCCATGGTAAATGTGTTAAAATCACTCCTGCTAAGGCTGAGCACATCAAACAATACAAGTGCCCAAGTTGCAGTAACAAGAGAACTAGAGTTTAG 732 0.4331 MEGIPHPIPRTVEEVFTDFQGRRAGLIMALTTDVEKFYQQCGPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTERKRLFQMINDLPTIFEVVTGSAKQSKDQSAAHNNGSKSKACGKVVLKMSAPLKEEDESGEEEEDDEQGATCGACGDNYASDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRTRV 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi805g00002 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 238 IPR013083 -
Gabi805g00002 243 SUPERFAMILY FYVE/PHD zinc finger 179 240 IPR011011 -
Gabi805g00002 243 Pfam PHD-finger 190 239 IPR019787 -
Gabi805g00002 243 CDD PHD_AL_plant 190 239 IPR044104 -
Gabi805g00002 243 SMART PHD_3 189 237 IPR001965 -
Gabi805g00002 243 FunFam PHD finger alfin-like protein 182 238 - -
Gabi805g00002 243 ProSitePatterns Zinc finger PHD-type signature. 190 236 IPR019786 -
Gabi805g00002 243 ProSiteProfiles Zinc finger PHD-type profile. 187 239 IPR019787 -
Gabi805g00002 243 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Gabi805g00002 243 PANTHER CPG BINDING PROTEIN 9 242 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi805g00002 Gabi-Chr805 8298 17508 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi805g00002 1 240 Alfin-like Transcription Factor Family AT1G14510 79.032 1.58e-127 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi805g00002 Alfin 1.2e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi805g00002 K26274 - gmx:100170698 438.343