Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi805g00001 ATGGAAGGCATTCCTCACCCAATTCCCAGAACAGTTGAGGAGGTTTTCACTGACTTTCAGGGTAGACGAGCTGGATTGATTATGGCCCTTACTACTGACGTTGAAAAGTTTTACCAGCAGTGCGGTCCTGAGAAGGAGAACTTGTGTCTATATGGATTTCCAAATGAAACATGGGAAGTCAATTTACCTGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCAGCATTAGGTATAAACTTCGCCAGGGACGGGATGCAAGAGAAAGACTGGTTATCACTGGTAGCAGTTCATAGTGACTCATGGCTTCTTGCTGTTGCTTTCTATTTTGGTGCCAGATTTGGATTCGGTAAGACTGAAAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCAACCATCTTCGAAGTTGTAACAGGAAGTGCTAAGCAATCAAAGGATCAATCAGCTGCTCACAACAATGGCAGCAAAAGCAAAGCATGTGGAAAGGTGTCCCGCCAATCTGAGTCTCAGGCCAAGGGAGTGAAGATGTCTGCACCACTCAAAGAAGAGGATGAGAGTGGAGAAGAAGAAGAAGATGACGAACAAGGTGCAACATGTGGGGCTTGTGGTGATAATTATGCCAGTGATGAGTTTTGGATATGTTGTGATATGTGTGAGAGATGGTTCCATGGTAAATGTGTTAAAATCACTCCTGCTAAGGCTGAGCACATCAAACAATACAAGTGCCCAAGTTGCAGTAACAAGAGAACTAGAGTTTAG 759 0.4414 MEGIPHPIPRTVEEVFTDFQGRRAGLIMALTTDVEKFYQQCGPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTERKRLFQMINDLPTIFEVVTGSAKQSKDQSAAHNNGSKSKACGKVSRQSESQAKGVKMSAPLKEEDESGEEEEDDEQGATCGACGDNYASDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRTRV 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi805g00001 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 247 IPR013083 -
Gabi805g00001 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Gabi805g00001 252 FunFam PHD finger alfin-like protein 191 247 - -
Gabi805g00001 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Gabi805g00001 252 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Gabi805g00001 252 SMART PHD_3 198 246 IPR001965 -
Gabi805g00001 252 PANTHER CPG BINDING PROTEIN 9 251 IPR045104 GO:0006355|GO:0042393
Gabi805g00001 252 MobiDBLite consensus disorder prediction 144 197 - -
Gabi805g00001 252 MobiDBLite consensus disorder prediction 183 197 - -
Gabi805g00001 252 SUPERFAMILY FYVE/PHD zinc finger 188 249 IPR011011 -
Gabi805g00001 252 Pfam PHD-finger 199 248 IPR019787 -
Gabi805g00001 252 CDD PHD_AL_plant 199 248 IPR044104 -
Gabi805g00001 252 MobiDBLite consensus disorder prediction 144 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi805g00001 Gabi-Chr805 8298 17860 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi805g00001 1 249 Alfin-like Transcription Factor Family AT1G14510 81.124 2.19e-132 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi805g00001 Alfin 1.3e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi805g00001 K26274 - gmx:100170698 458.759