Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi802g00002 ATGGAAGGATCCTTATTTGTGAGAAAAGGCGCATGGAGTAAAGAGGAAGATGACCTTTTGAGGGCTTGTGTGCAACAATACGGGGAAGGAAAATGGCACCTAGTTCCTGCAAGAGCAGGCTTAAACAGATGCCGCAAAAGCTGTAGACTGAGGTGGTTGAATTATCTAAAACCAAATATCAAGCGAGGAGGGTTCACTGAGGACGAAATTGATATGATGATAAGATTGCATAAACTTTTGGGAAACAGATGGTCCCTGATTGCTGGAAGGCTTCCTGGAAGAACTCCTAACGATGTGAAAAACTATTGGAATACCTATATTCGAAGGAGGGTATCCTCTCATAAGGAAGATATCAATGCAAAGCCAAAGGAAACAGTGAAACCTCAACTTGTGATAAAGCCTCAGCCTCTAACTTTCTCAAGAAATTCTCCCTGGTTGAAAAGGAGATTCATTAGGGAAGATGAGAATAAGACCAAAGAGTGCACTACTGAAACACATGCAGCTTTATCAGAGAGCAATAATTGTTTGGATCAGTGGATGGGAACTGTGATGGACGACGTGAGAGTCAATGCAGAGAACGACATGGACTTTCTTATAGAAGATCAATGTTGGAGTGATTTTCTTCTTGATGTCAATATGTGGGATTCATGA 651 0.4147 MEGSLFVRKGAWSKEEDDLLRACVQQYGEGKWHLVPARAGLNRCRKSCRLRWLNYLKPNIKRGGFTEDEIDMMIRLHKLLGNRWSLIAGRLPGRTPNDVKNYWNTYIRRRVSSHKEDINAKPKETVKPQLVIKPQPLTFSRNSPWLKRRFIREDENKTKECTTETHAALSESNNCLDQWMGTVMDDVRVNAENDMDFLIEDQCWSDFLLDVNMWDS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi802g00002 216 Gene3D - 64 130 - -
Gabi802g00002 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 60 IPR017930 -
Gabi802g00002 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Gabi802g00002 216 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Gabi802g00002 216 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 153 - -
Gabi802g00002 216 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Gabi802g00002 216 CDD SANT 11 56 IPR001005 -
Gabi802g00002 216 Gene3D - 9 61 - -
Gabi802g00002 216 CDD SANT 65 107 IPR001005 -
Gabi802g00002 216 FunFam Myb transcription factor 9 61 - -
Gabi802g00002 216 SUPERFAMILY Homeodomain-like 8 103 IPR009057 -
Gabi802g00002 216 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Gabi802g00002 216 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Gabi802g00002 216 SMART sant 61 109 IPR001005 -
Gabi802g00002 216 SMART sant 8 58 IPR001005 -
Gabi802g00002 216 FunFam Transcription factor MYB113 64 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi802g00002 Gabi-Chr802 79936 81711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi802g00002 7 140 MYB Transcription Factor Family AT1G66370 60.284 1.38e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi802g00002 Myb_DNA-binding 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi802g00002 - K16166 lang:109335100 281.952