Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi7g00009 ATGGTAATAGAGATGAACAGTTCTGGGAAAAAGATTGCATTGCCATTGAATCAATGCGTTAAGGACAAGCTTTCGCTCCAATCTAATAATGCCTTCAAAGCTCCATCATCCCCCAAGCAACCCTTTTTCATTGGTGTTACTGGTGGAACTGCATCTGGGAAAACAACTGTGTGCAACATGATAAACACCCAGCTTCATGATCGACGTGTAGTTCTCATTAATCAAGACTCCTTTTACCACTCTTTGAGTGACAAGTTGCAACAGAAAATTAACGAGTACAACTTTGATCATCCTGATGCATTTGATACTGAGCTTATGCTTTCAAATTTGGAGAAATTAAAACGTGGAGAAGGTGTTACCATTCCCAATTATGATATGAAGAGCCGTAAGAGAACTCAACCTGAACGTGAGGTTAATCCTGCAGATATCATAATTTTAGAAGGGATATTAGTTCTTCACGATCCTCGTGTCCGTGATATTTTGAACATGAAGATCTTTGTTGATGGAGATTCTGATGTGCGCCTTACACGGAGGATTCAACGTCTTGCTATTGAACGTGGGAGGAACATTCAGAATGTTCTGGACCAATATTCCAGATTTGTGAAGCCCAGTTTTGAAGATTTTGTACTGCCAACAAAAAAATATGCCGATATTATCATCCCAGGAGGAGGAGATAATGATGTTGCCATTGACTTGATAGTACAAAATATACGTACGAAGCTTGGCCAGCATGATATGTGCAAAATATATCCAAACATTTTTCTTATGTTTTCAACATTTCAGATAAAAGGAATGCATACTCTCATCCGTGATGTCAGAACAACAAAGCATGACTTTGTCTTTTACTCAGACCGTCTAATTAGGCTGGTTGTCGAGCATGGACTGGGACACCTTCCTTTTACTGAAAAGCAGGTCATTACACCAACAGGATCGGTATACTCAGGTGTTGTCTTCTGTAGCAGGCTGTGCGGAGTATCAGTCATTAGAAGTGGAGAAAGCATGGAAAATGCATTAAGAGCATGCTGCAAGGGAATCAAAATTGGTAAAATCCTTATTCATGGACATGGCACAAACGGCCGGCAGTTAGTCTATGAGAAGCTACCATCAGACATTGCAAGCCGTCATGTTTTGCTACTTGATCCAGTTCTTGCCACAGGAAATTCTGCAGTCAAAGCTATCTCTCTGCTTCTCAAGAAGGGTGTACCAGAATCCAACATTATCTTTCTAAATTTAATAGCAGCACCACAGGGAATAAATGCTGTTTGTGAGAGATTTCCAATGCTTAAACTTGTGACATCAGAGATTGATTCATCACTAAATGAGGATTCTCGTGTGGTCCCTGGCTTGGGGGAGTTTGGTGATCGTTACTTTGCCACTGATGAGAATAGTGAAAAGATTGATATATCTAGCTCATACTAG 1419 0.4031 MVIEMNSSGKKIALPLNQCVKDKLSLQSNNAFKAPSSPKQPFFIGVTGGTASGKTTVCNMINTQLHDRRVVLINQDSFYHSLSDKLQQKINEYNFDHPDAFDTELMLSNLEKLKRGEGVTIPNYDMKSRKRTQPEREVNPADIIILEGILVLHDPRVRDILNMKIFVDGDSDVRLTRRIQRLAIERGRNIQNVLDQYSRFVKPSFEDFVLPTKKYADIIIPGGGDNDVAIDLIVQNIRTKLGQHDMCKIYPNIFLMFSTFQIKGMHTLIRDVRTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYSGVVFCSRLCGVSVIRSGESMENALRACCKGIKIGKILIHGHGTNGRQLVYEKLPSDIASRHVLLLDPVLATGNSAVKAISLLLKKGVPESNIIFLNLIAAPQGINAVCERFPMLKLVTSEIDSSLNEDSRVVPGLGEFGDRYFATDENSEKIDISSSY 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi7g00009 472 Gene3D - 39 250 IPR027417 -
Gabi7g00009 472 FunFam Uridine kinase 37 243 - -
Gabi7g00009 472 CDD UMPK 43 240 IPR000764 -
Gabi7g00009 472 PANTHER URIDINE KINASE 33 370 - -
Gabi7g00009 472 FunFam Uridine kinase 244 459 - -
Gabi7g00009 472 Pfam Uracil phosphoribosyltransferase 258 459 - -
Gabi7g00009 472 SUPERFAMILY PRTase-like 243 459 IPR029057 -
Gabi7g00009 472 CDD PRTases_typeI 322 432 IPR000836 -
Gabi7g00009 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 233 IPR027417 -
Gabi7g00009 472 Pfam Phosphoribulokinase / Uridine kinase family 43 229 IPR006083 GO:0005524|GO:0016301
Gabi7g00009 472 Gene3D - 251 460 IPR029057 -
Gabi7g00009 472 NCBIfam uridine kinase 41 240 IPR000764 -
Gabi7g00009 472 PRINTS Uridine kinase signature 71 82 - -
Gabi7g00009 472 PRINTS Uridine kinase signature 186 197 - -
Gabi7g00009 472 PRINTS Uridine kinase signature 208 221 - -
Gabi7g00009 472 PRINTS Uridine kinase signature 41 58 - -
Gabi7g00009 472 PRINTS Uridine kinase signature 116 131 - -
Gabi7g00009 472 PRINTS Uridine kinase signature 172 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi7g00009 Gabi-Chr7 94407 105826 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi7g00009 39 462 PRT Gene Family AT4G26510 74.292 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi7g00009 K00876 - qsa:O6P43_008877 713.761