Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi799g00017 ATGTTTACCTTCAACCCCTTTTCCTTGGAACTTTCTTCTTCATTTGACTCATCATCGCCGGTGTCCGGAACCTCTGGCGGGGCGTCATTTTCCGACGAGGAGGTGCTGCTGGCGGCGAGGAACCCGAAGAAACGTGCGGGGAGGAAGAAGTACAAGGAGACTCGCCACCCTGTGTATTGGGGCGTGAGGAGGAGGAAATCAGATAAGTGGGTTTGTGAAGTGAGAGAGCCAAACAAGAAGACAAGGATATGGCTCGGTACTTTTCCCACGGCGGAGATGGCGGCGCGTGCACACGACGTGGCCGCCATGGCGCTGAGAGGCCGGTCTGCTCGTCTTAACTTTGCCGACTCTGCATGGCGGCTTCCTGTCCCTGCCACCGCCGAGGCTAAGGATATTCAGAGGACAGCCACGGAAGCCGCTGAGGCTTTCCGGCCACCGCGGAATGAGAGTGTTGAGGAGGTGGCAGCCACGGAGGAGCAGAGTGTGTTTTATTTGGAGGAGGAAGAAAAAAAGACAGTGATGGAGGTTCCACAGTTGTTGAGAGATATGGCACTCATGTCCCCAACACATTGCTTCGGGTTTGAGTATGAATATGATGACGTGGACGTTCAAGATGCTGAGGTGTCACTATGGAGTTTTTAA 642 0.5421 MFTFNPFSLELSSSFDSSSPVSGTSGGASFSDEEVLLAARNPKKRAGRKKYKETRHPVYWGVRRRKSDKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAMALRGRSARLNFADSAWRLPVPATAEAKDIQRTATEAAEAFRPPRNESVEEVAATEEQSVFYLEEEEKKTVMEVPQLLRDMALMSPTHCFGFEYEYDDVDVQDAEVSLWSF 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi799g00017 213 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Gabi799g00017 213 FunFam Ethylene-responsive transcription factor 2 57 116 - -
Gabi799g00017 213 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Gabi799g00017 213 MobiDBLite consensus disorder prediction 1 29 - -
Gabi799g00017 213 CDD AP2 59 117 IPR001471 GO:0003700|GO:0006355
Gabi799g00017 213 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Gabi799g00017 213 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Gabi799g00017 213 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 213 IPR045277 GO:0003700
Gabi799g00017 213 Pfam AP2 domain 57 107 IPR001471 GO:0003700|GO:0006355
Gabi799g00017 213 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
Gabi799g00017 213 SUPERFAMILY DNA-binding domain 58 117 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi799g00017 Gabi-Chr799 143444 144085 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi799g00017 1 213 AP2-EREBP Transcription Factor Family AT4G25480 52.193 5.21e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi799g00017 AP2 4.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi799g00017 - - gmx:547622 278.87