Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi799g00014 ATGGCCTCTGCAACACTGTTTCAGTGCCACCCTCCTTTTTCTTCTTCTGCCTCTTCAATCAGAACTCTGAAACCAACACTCTCACACTCACACTCACGCTCACTCTCACTCTCACTCTCACCCTTTCTTCGCCTACCACGCTTCTCTCTCTCCTCTACTACAACCCCACCACGTGCCTACGTCACAGGACCCGCATCCGACCCGATTTTCTGCGACCCGGATCCGAAGCTTGATAGGTCGCCTCCGGATGAGGTCAAGCCACCAAACGTTATAACCAGGAACCTTCTCTTGACCCTTCTCATGAAGCACAAATTGCGTCTTGCTGTTTCGGTTGCAGCACTCTTTGCCTGCACCACCTGCACTCTATCCATGCCCATTTTTTCTGGGCGGTTTTTCGAAGTTCTTATTGGTGCTAGACCAGAACCATTATGGAGGCTGCTCAGTAAAATTGGGATTCTGTATGCCCTGGAGCCACTTTTAACTGTTGTTTTTGTTATAAACATGAACATTGTGTGGGAGAAAGTTATGTCAACACTAAGAGCACAGGTCTTTGGAAGAATATTGATTCAAAAGATTGAATTTTTTGACAAATACAAGGTTGGTGAACTCACTGGTTTGTTAACATCTGATTTGGGTTCTCTTAAAGATATTGTCAGTGAGAATGTTTCAAGGGACCGCGGATTCAGGGCATTATCTGAGGTCATTGGGACATTATTCATACTTTTTTCTTTATCCCCTCAACTGGCACCCATTCTGGCTGTTCTGATGCTTGCTGTTTCCTTTTCAATTGCTGTCTACAAGAGATCCACTTTGCCAATTTTTAAATCACATGGGTTGGCCCAAGCATATATATCTGACTGTGTAACGGAAACATTTTCTGCCATTCGAACAGTAAGATCCTTTGGCGGTGAAAAGCGCCAAATGTTCACATTTGCTAACCAGGTTCTTTCTTTCCAATCAAGTGGGATAAAGCTGGGAACTTTCAAGTCTGTAAATGAATCCTTGACTAGAGTTGCTGTTTATATTTCTTTAATCGCATTATATTGTCTCGGAGGAAGCAAAGTTAAGGCGGGTGAGCTCTCTGTTGGATCTATGGCATCTTTTATAGGATATACTTTCACTTTAACATTTGCTGTTCAAGGACTGGTTAATACTTTTGGAGATCTTCGTGGAACTTTTGCTGCTGTTGAGAGGATCAATTCTGTTTTGTCTGTAGTTCAAGTTGACGATGCCCTTGCCTATGGCTTAGAAAGAGAACTGAAACAAAAAGCAGTGGAAGATGAAAACTATAAATTGTTCTTCTCAAATAGTTCTGCTGAGAAAGACCAAAAAAATTATCTGCATTACATGTCAGCACTAAAAACATCAAACAATTTGTTTAGCTTAGCTTGGTCTGGAGATGTTTGTCTTGAAGATGTGTATTTCTCTTATCCTTTAAGGCCAGATGTAGAAATCTTACGTGGCTTAAATTTAAGACTAAAATGTGGAACTGTAACTGCACTGGTGGGTCCTAGTGGTGCAGGCAAAAGTACAATAGTACAGCTACTGTCTCGTTTTTATGAGCCAGCAAGAGGTTGTATAACAGTTGGAGGAGAGGATGTCAGAACATTTGACAAGAGTGAATGGGCCCGGGTTGTCTCTATTGTGAATCAAGAGCCTGTTCTGTTTTCGGTGTCTGTTGGAGAAAATATTGCATATGGGCTTCCAGATGATAATGTTTCTAAAGACGATGTGATTAAGGCCGCGAAAGCTGCAAATGCTCATGATTTTATAATTTCACTTCCACAGGGTTATGATACACTTGTTGGTGAGCGCGGCGGCCTACTGAGTGGAGGGCAGAGACAGAGAATTGCTATTGCCCGGGCTCTCCTAAAGAATGCTCCCATCCTTATACTTGATGAGGCCACCAGTGCCCTAGATGCCGTCAGTGAGCGCTTGGTCCAGAGCGCTCTCAACCATTTGATGAAGGGGAGGACAACATTAGTAATAGCTCACCGATTAAGCACGGTCCAAAATGCCTATCAAATTGCACTTTGTTCTGATGGGAGGATTGTAGAACTAGGCACCCATTTTGAGTTGTTGGCTAAGAAGGGCCAATATGCTTCACTGGTTGCCACTCAAAGGCTTGCATTTGAATGA 2139 0.4306 MASATLFQCHPPFSSSASSIRTLKPTLSHSHSRSLSLSLSPFLRLPRFSLSSTTTPPRAYVTGPASDPIFCDPDPKLDRSPPDEVKPPNVITRNLLLTLLMKHKLRLAVSVAALFACTTCTLSMPIFSGRFFEVLIGARPEPLWRLLSKIGILYALEPLLTVVFVINMNIVWEKVMSTLRAQVFGRILIQKIEFFDKYKVGELTGLLTSDLGSLKDIVSENVSRDRGFRALSEVIGTLFILFSLSPQLAPILAVLMLAVSFSIAVYKRSTLPIFKSHGLAQAYISDCVTETFSAIRTVRSFGGEKRQMFTFANQVLSFQSSGIKLGTFKSVNESLTRVAVYISLIALYCLGGSKVKAGELSVGSMASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSVLSVVQVDDALAYGLERELKQKAVEDENYKLFFSNSSAEKDQKNYLHYMSALKTSNNLFSLAWSGDVCLEDVYFSYPLRPDVEILRGLNLRLKCGTVTALVGPSGAGKSTIVQLLSRFYEPARGCITVGGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDDNVSKDDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQSALNHLMKGRTTLVIAHRLSTVQNAYQIALCSDGRIVELGTHFELLAKKGQYASLVATQRLAFE 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi799g00014 712 Gene3D ABC transporter type 1, transmembrane domain 82 407 IPR036640 GO:0005524|GO:0016020
Gabi799g00014 712 SMART AAA_5 495 669 IPR003593 GO:0016887
Gabi799g00014 712 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 466 710 - -
Gabi799g00014 712 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 83 710 IPR039421 -
Gabi799g00014 712 Pfam ABC transporter transmembrane region 109 378 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi799g00014 712 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 108 391 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi799g00014 712 CDD ABC_6TM_TAP_ABCB8_10_like 113 399 - -
Gabi799g00014 712 Pfam ABC transporter 486 637 IPR003439 GO:0005524
Gabi799g00014 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 458 707 IPR027417 -
Gabi799g00014 712 ProSitePatterns ABC transporters family signature. 609 623 IPR017871 GO:0005524|GO:0016887
Gabi799g00014 712 Gene3D - 466 709 IPR027417 -
Gabi799g00014 712 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 468 706 IPR003439 GO:0005524
Gabi799g00014 712 SUPERFAMILY ABC transporter transmembrane region 96 399 IPR036640 GO:0005524|GO:0016020
Gabi799g00014 712 CDD ABC_MTABC3_MDL1_MDL2 470 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi799g00014 Gabi-Chr799 119125 125782 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi799g00014 465 712 Calmodulin-binding Proteins AT2G36910 54.365 1.89e-72 254