Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi799g00011 ATGGCTGTTGCCAAGAGCAACAGCAACAGTGGACCTTGTACTTCATATAATTGTTACAAAGTAGCAGGCTTGACTGAAACCATATTAGACACAAACCATACCTCTAATTTGAAAGATAGGTACATTCTTGGGGAGCAGTTAGGTTGGGGACAGTTTGGTGTGATAAGAGCATGCTCTGACAAGTTGTCAGGAGAGGTTTTAGCTTGCAAATCAATTGCTAAAGATAGACTGGTTACTTTGGATGATCTGAGAAGTGTCAAGCTTGAGATTGAGATAATGGCTAGGCTATCTGGGCATCCAAATGTTGTGGATCTCAAGGCAGTTTATGAAGAAGAAGGGTTTGTTCATTTGGTTATGGAGCTTTGTGCTGGAGGGGAGCTGTTTCACCGGTTAGAGAAGCATGGAAGGTTTTCTGAATCTGAAGCCAGAGTTATCTTTAGGCACCTAATGCAGGTGGTTTTGTATTGTCATGAAAATGGGGTTGTTCATAGAGATTTGAAGCCTGAGAACATTCTCCTATCGACAAGAGCCTCTTCATCTCCAATTAAATTGGCTGATTTTGGGCTTGCAACTTACATTAAGCCTGGGGTTATTCTTTACATTCTATTGAGTGGGATGCCTCCATTTTGGGGGAAGACCAAATCGCGGATATTTGAAGCTGTTAAGGCTGCTTCCCTTAGGTTCCCATCGGAACCTTGGGATCGCATTTCTCAATCTGCTAAGGATTTGATCAGGGGAATGCTGTGTACAGAACCTTCTCGAAGGCTTACTGCTCAAGGGGTTTTAGATCATTGCTGGATGGAAAGCAATCAAACAAATACTGAACAACTAAGTACACATAAAATCCGACGTTGTGAAGAATGGGATGTTGGTGGCAGCTCATTCTCTGCCTCTTTTATGTCCAGGAATCAGGACATCAGCTTTGGCACGGGATCGCCTACTTGTGATGCTCAATCAACTACATTCACTTGCAGATCATCGTTTTCTTCTTTTTTTGTGGAACCGGTTACTCCTTGTTTAATTTCTGGTGGGTTTTCATTTCGGAGCACAGACGATTCAACAAGTTTGGAATTTTCTTCTCCTGTTGTTCCCTCGATGCTTAGCTTTTCATTTCTTAGCCCCAGTTCTGTTGTTGGGAAAAAGAGTTGTAATTTAGAGTGCTCAGCTAACATGTCAGATGTAAATGCAATTGCTGGAGAAGAAGCAAGCTTGGGAAAGTTGCTATTACTACCAGATTCTCCCCTTTGCGTTGGACTTGATGTTAAAGAAATGGATCGCAAGGCTATAGAACCTAAAAGAGCTGGTGGAATGAATGGACATAGGGTATTGGGAATCCACAGCAAGAGAAATAGGACAATTGGACTTGGTGAGTGTGAGCAACTTGACCTTGTGGTGACTGAATCAGTCATTCGCTGGTCATCATGCACTCAACTCCCTACATCTTTGAGATCATCTCTTGTCTGCTAA 1467 0.4254 MAVAKSNSNSGPCTSYNCYKVAGLTETILDTNHTSNLKDRYILGEQLGWGQFGVIRACSDKLSGEVLACKSIAKDRLVTLDDLRSVKLEIEIMARLSGHPNVVDLKAVYEEEGFVHLVMELCAGGELFHRLEKHGRFSESEARVIFRHLMQVVLYCHENGVVHRDLKPENILLSTRASSSPIKLADFGLATYIKPGVILYILLSGMPPFWGKTKSRIFEAVKAASLRFPSEPWDRISQSAKDLIRGMLCTEPSRRLTAQGVLDHCWMESNQTNTEQLSTHKIRRCEEWDVGGSSFSASFMSRNQDISFGTGSPTCDAQSTTFTCRSSFSSFFVEPVTPCLISGGFSFRSTDDSTSLEFSSPVVPSMLSFSFLSPSSVVGKKSCNLECSANMSDVNAIAGEEASLGKLLLLPDSPLCVGLDVKEMDRKAIEPKRAGGMNGHRVLGIHSKRNRTIGLGECEQLDLVVTESVIRWSSCTQLPTSLRSSLVC 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi799g00011 488 ProSitePatterns Protein kinases ATP-binding region signature. 47 74 IPR017441 GO:0005524
Gabi799g00011 488 SMART serkin_6 41 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi799g00011 488 Gene3D Transferase(Phosphotransferase) domain 1 195 290 - -
Gabi799g00011 488 Gene3D Transferase(Phosphotransferase) domain 1 31 194 - -
Gabi799g00011 488 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 289 - -
Gabi799g00011 488 Pfam Protein kinase domain 196 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi799g00011 488 Pfam Protein kinase domain 43 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi799g00011 488 SUPERFAMILY Protein kinase-like (PK-like) 38 332 IPR011009 -
Gabi799g00011 488 CDD STKc_CAMK 40 266 - -
Gabi799g00011 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Gabi799g00011 488 ProSiteProfiles Protein kinase domain profile. 41 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi799g00011 Gabi-Chr799 105022 108750 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi799g00011 28 272 EF-hand Containing Proteins AT3G57530 42.960 5.98e-76 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi799g00011 Pkinase 4.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi799g00011 - - pvu:PHAVU_004G122500g 825.854