Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi799g00006 ATGGACGTAGACGGAGGGAACAAGCGCGTGTTTCACAGGCTCGGTGGACCCTCGGGTGACACGAAGCACCAGAAAGTGTGCTTTCATTGGCAAGCGGGCAAGTGCAATCGGTACCCATGTCCGTTTCTTCATAGCGAGTTGCCTCCTTCCAACGCCAATGGATCCTCTTCGAAAAGGCCTTATGGGTCTGCCGATAATTCGGGCTTTTCGGGCCCACGCAGGAACCCGAATTACAGCAATTGGGGGCATGGCGGTGGCCGTGGTGGCGGTCGAGGAGCTGCGAGTGGTGGTAGAGGAGTAGTTATGAAGGCTGATAAAGTTTGTAACTATTGGATTCAAGGGAAATGTAGTTATGGAGAGGGGTGTAAGTTTCTTCACTCTTGGAGTTTAGGGGATGGTTTTTCTTTGTTGACTCAGCTTGAAGGGCATCAGAAGGTTGTGAGTGGGATTGCCCTGCCCTCTGATAATAAGCTTTATACTGGAAGTGCTGATGAGACTCTAAGGGTTTGGGACTGCCAGTCTGGAAAGTGTATAGCTGTGGTCACTCTAGGTGGTGAAGTAGGTTGCATGATCAGTGAAGGTCCCTGGGTTTTTGTTGGCATACCCAATTTTGTTAAGGCCTGGAACACGCAAAATTCAATGGAGCTAAGTCTAAATGGCCCTGTGGGACAAGTTTATGCACTTGTTATTAATAATGATATGCTCTTTGCTGGTACACAGGATGGGTCTATATTGGCATGGAAGTTTAATGTAGTTACCAACTGCTTCGAGCCAGCTGCATCACTTAAAGGTCATTCCCGTGGTGTTGTTTCGTTAGTTGTTGGAGCTAATAGACTGTACTCTGGTTCAATGGACAATACAATAAGAGTCTGGAGCCTTGAAACCTTGCAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGAACAGTTCCTTTTATCTTGTTCGTTGGACAAAACAGTGAAGGTGTGGTTTGCTACGGAAAGTGGAAACTTGGAAGTAACATATACTCACAATGAAGAAAATGGTATACTCACACTCTGTGGGATGCATGATTCACAAGGCAAGCCCATTTTGCTGTGCTCTTGCAATGACAATACTGTGCGCCTCTATGATCTGCCATCATTTGCAGAGAGGGGTAAGATATACTCGAAACAAGAGGTACGTGCAATTCAGATAGGGCCTAGTGGCATATTCTTCACTGGTGATGGAACTGGTCAAGTGAGAGTGTGGAATTGGACAACGGAGCCAACTACTACTACCTTCCAATAA 1293 0.4656 MDVDGGNKRVFHRLGGPSGDTKHQKVCFHWQAGKCNRYPCPFLHSELPPSNANGSSSKRPYGSADNSGFSGPRRNPNYSNWGHGGGRGGGRGAASGGRGVVMKADKVCNYWIQGKCSYGEGCKFLHSWSLGDGFSLLTQLEGHQKVVSGIALPSDNKLYTGSADETLRVWDCQSGKCIAVVTLGGEVGCMISEGPWVFVGIPNFVKAWNTQNSMELSLNGPVGQVYALVINNDMLFAGTQDGSILAWKFNVVTNCFEPAASLKGHSRGVVSLVVGANRLYSGSMDNTIRVWSLETLQCLQTLTEHTSVVMSVLCWEQFLLSCSLDKTVKVWFATESGNLEVTYTHNEENGILTLCGMHDSQGKPILLCSCNDNTVRLYDLPSFAERGKIYSKQEVRAIQIGPSGIFFTGDGTGQVRVWNWTTEPTTTTFQ 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi799g00006 430 PANTHER - 104 425 IPR044715 -
Gabi799g00006 430 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Gabi799g00006 430 PRINTS G protein beta WD-40 repeat signature 319 333 IPR020472 -
Gabi799g00006 430 PRINTS G protein beta WD-40 repeat signature 279 293 IPR020472 -
Gabi799g00006 430 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 140 171 - -
Gabi799g00006 430 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 295 - -
Gabi799g00006 430 MobiDBLite consensus disorder prediction 1 22 - -
Gabi799g00006 430 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 301 IPR001680 GO:0005515
Gabi799g00006 430 SMART c3hfinal6 23 46 IPR000571 GO:0046872
Gabi799g00006 430 SMART c3hfinal6 104 128 IPR000571 GO:0046872
Gabi799g00006 430 FunFam Zinc finger CCCH domain-containing protein 48 219 427 - -
Gabi799g00006 430 ProSiteProfiles Zinc finger C3H1-type profile. 102 129 IPR000571 GO:0046872
Gabi799g00006 430 Pfam WD domain, G-beta repeat 297 331 IPR001680 GO:0005515
Gabi799g00006 430 Pfam WD domain, G-beta repeat 136 171 IPR001680 GO:0005515
Gabi799g00006 430 Pfam WD domain, G-beta repeat 258 292 IPR001680 GO:0005515
Gabi799g00006 430 SUPERFAMILY WD40 repeat-like 128 430 IPR036322 GO:0005515
Gabi799g00006 430 Gene3D - 216 430 IPR015943 GO:0005515
Gabi799g00006 430 MobiDBLite consensus disorder prediction 1 19 - -
Gabi799g00006 430 Gene3D - 116 215 IPR015943 GO:0005515
Gabi799g00006 430 MobiDBLite consensus disorder prediction 51 77 - -
Gabi799g00006 430 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
Gabi799g00006 430 SMART WD40_4 255 292 IPR001680 GO:0005515
Gabi799g00006 430 SMART WD40_4 295 332 IPR001680 GO:0005515
Gabi799g00006 430 SMART WD40_4 336 379 IPR001680 GO:0005515
Gabi799g00006 430 SMART WD40_4 211 248 IPR001680 GO:0005515
Gabi799g00006 430 SMART WD40_4 133 171 IPR001680 GO:0005515
Gabi799g00006 430 SMART WD40_4 382 419 IPR001680 GO:0005515
Gabi799g00006 430 MobiDBLite consensus disorder prediction 51 96 - -
Gabi799g00006 430 ProSiteProfiles Trp-Asp (WD) repeats profile. 140 180 IPR001680 GO:0005515
Gabi799g00006 430 SUPERFAMILY CCCH zinc finger 104 127 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi799g00006 Gabi-Chr799 77394 85542 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi799g00006 134 418 Acyl Lipid Metabolism Gene Families AT3G18860 23.934 3.36e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi799g00006 WD40 0.0021 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi799g00006 - - gmx:100775542 739.954