Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi799g00005 ATGGACGTAGACGGAGGGAACAAGCGCGTGTTTCACAGGCTCGGTGGACCCTCGGGTGACACGAAGCACCAGAAAGTGTGCTTTCATTGGCAAGCGGGCAAGTGCAATCGGTACCCATGTCCGTTTCTTCATAGCGAGTTGCCTCCTTCCAACGCCAATGGATCCTCTTCGAAAAGGCCTTATGGGTCTGCCGATAATTCGGGCTTTTCGGGCCCACGCAGGAACCCGAATTACAGCAATTGGGGGCATGGCGGTGGCCGTGGAGTAGTTATGAAGGCTGATAAAGTTTGTAACTATTGGATTCAAGGGAAATGTAGTTATGGAGAGGGGTGTAAGTTTCTTCACTCTTGGAGTTTAGGGGATGGTTTTTCTTTGTTGACTCAGCTTGAAGGGCATCAGAAGGTTGTGAGTGGGATTGCCCTGCCCTCTGATAATAAGCTTTATACTGGAAGTGCTGATGAGACTCTAAGGGTTTGGGACTGCCAGTCTGGAAAGTGTATAGCTGTGGTCACTCTAGGTGGTGAAGTAGGTTGCATGATCAGTGAAGGTCCCTGGGTTTTTGTTGGCATACCCAATTTTGTTAAGGCCTGGAACACGCAAAATTCAATGGAGCTAAGTCTAAATGGCCCTGTGGGACAAGTTTATGCACTTGTTATTAATAATGATATGCTCTTTGCTGGTACACAGGATGGGTCTATATTGGCATGGAAGTTTAATGTAGTTACCAACTGCTTCGAGCCAGCTGCATCACTTAAAGGTCATTCCCGTGGTGTTGTTTCGTTAGTTGTTGGAGCTAATAGACTGTACTCTGGTTCAATGGACAATACAATAAGAGTCTGGAGCCTTGAAACCTTGCAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGAACAGTTCCTTTTATCTTGTTCGTTGGACAAAACAGTGAAGGTGTGGTTTGCTACGGAAAGTGGAAACTTGGAAGTAACATATACTCACAATGAAGAAAATGGTATACTCACACTCTGTGGGATGCATGATTCACAAGGCAAGCCCATTTTGCTGTGCTCTTGCAATGACAATACTGTGCGCCTCTATGATCTGCCATCATTTGCAGAGAGGGGTAAGATATACTCGAAACAAGAGGTACGTGCAATTCAGATAGGGCCTAGTGGCATATTCTTCACTGGTGATGGAACTGGTCAAGTGAGAGTGTGGAATTGGACAACGGAGCCAACTACTACTACCTTCCAATAA 1260 0.4603 MDVDGGNKRVFHRLGGPSGDTKHQKVCFHWQAGKCNRYPCPFLHSELPPSNANGSSSKRPYGSADNSGFSGPRRNPNYSNWGHGGGRGVVMKADKVCNYWIQGKCSYGEGCKFLHSWSLGDGFSLLTQLEGHQKVVSGIALPSDNKLYTGSADETLRVWDCQSGKCIAVVTLGGEVGCMISEGPWVFVGIPNFVKAWNTQNSMELSLNGPVGQVYALVINNDMLFAGTQDGSILAWKFNVVTNCFEPAASLKGHSRGVVSLVVGANRLYSGSMDNTIRVWSLETLQCLQTLTEHTSVVMSVLCWEQFLLSCSLDKTVKVWFATESGNLEVTYTHNEENGILTLCGMHDSQGKPILLCSCNDNTVRLYDLPSFAERGKIYSKQEVRAIQIGPSGIFFTGDGTGQVRVWNWTTEPTTTTFQ 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi799g00005 419 FunFam Zinc finger CCCH domain-containing protein 48 208 416 - -
Gabi799g00005 419 MobiDBLite consensus disorder prediction 1 22 - -
Gabi799g00005 419 Gene3D - 116 185 IPR015943 GO:0005515
Gabi799g00005 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 251 290 IPR001680 GO:0005515
Gabi799g00005 419 ProSiteProfiles Zinc finger C3H1-type profile. 91 118 IPR000571 GO:0046872
Gabi799g00005 419 SUPERFAMILY CCCH zinc finger 93 116 IPR036855 GO:0046872
Gabi799g00005 419 Gene3D - 19 115 - -
Gabi799g00005 419 SMART WD40_4 244 281 IPR001680 GO:0005515
Gabi799g00005 419 SMART WD40_4 284 321 IPR001680 GO:0005515
Gabi799g00005 419 SMART WD40_4 325 368 IPR001680 GO:0005515
Gabi799g00005 419 SMART WD40_4 200 237 IPR001680 GO:0005515
Gabi799g00005 419 SMART WD40_4 122 160 IPR001680 GO:0005515
Gabi799g00005 419 SMART WD40_4 371 408 IPR001680 GO:0005515
Gabi799g00005 419 PRINTS G protein beta WD-40 repeat signature 308 322 IPR020472 -
Gabi799g00005 419 PRINTS G protein beta WD-40 repeat signature 268 282 IPR020472 -
Gabi799g00005 419 PRINTS G protein beta WD-40 repeat signature 147 161 IPR020472 -
Gabi799g00005 419 MobiDBLite consensus disorder prediction 1 19 - -
Gabi799g00005 419 MobiDBLite consensus disorder prediction 51 77 - -
Gabi799g00005 419 MobiDBLite consensus disorder prediction 51 82 - -
Gabi799g00005 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 129 160 - -
Gabi799g00005 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 251 284 - -
Gabi799g00005 419 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
Gabi799g00005 419 PANTHER - 93 414 IPR044715 -
Gabi799g00005 419 Gene3D - 186 419 IPR015943 GO:0005515
Gabi799g00005 419 SUPERFAMILY WD40 repeat-like 117 419 IPR036322 GO:0005515
Gabi799g00005 419 SMART c3hfinal6 23 46 IPR000571 GO:0046872
Gabi799g00005 419 SMART c3hfinal6 93 117 IPR000571 GO:0046872
Gabi799g00005 419 Pfam WD domain, G-beta repeat 286 320 IPR001680 GO:0005515
Gabi799g00005 419 Pfam WD domain, G-beta repeat 247 281 IPR001680 GO:0005515
Gabi799g00005 419 Pfam WD domain, G-beta repeat 125 160 IPR001680 GO:0005515
Gabi799g00005 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 129 169 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi799g00005 Gabi-Chr799 77392 85542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi799g00005 123 407 Acyl Lipid Metabolism Gene Families AT3G18860 24.590 1.97e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi799g00005 WD40 0.002 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi799g00005 - - gmx:100775542 740.339