Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi795g00002 ATGGCTTGTGAGAGAGTTGATATCTCTATTTTGGTTGTGGATGATGATGAAACTTCTCTGACCATCGTTTCTAATGTACTCATCTCATGGGAATATAAAGTTCTCACTGCCAACAGTGCTCGTAATGCTTTGGAGACACTTAGAGAGTTTGAAGGCTTTTTTGATCTCGTCATTACAGAGCTTCATATTTCAGGAATTGATGGATTTGAATTTCAAAAGCGTGTCAAAGATGAATTCCAGCTACCTGTAATAAGGGCCGTGCCAAAGAAAATTCTCGAAATCATGAATGTGCCAAACTTGACAAGAGAAAATATTGCCAGTCACTTGCAGAAGTATCGCATTTTCCTGAGAAAAGTTGCAGAGAGAGGAATAATTGAGGGCTTATCTGAGAGGACTCTAAGGTCAAGGTTTGCTTCTGGGGTTTCAGCTTTAATGATCAAAGAAATCCAAACAAGAACAGAGAAACTATGTGTTCCTGTGCAACAATATTTGAAAAGATTAGCACATCAAAAAGGAATCAGAGGGATTGTCAATGATCTTCATGATAAACAAGTTTCAAGCAATGCTTATATGACTAATCAACTAGGAAGAGGTCAATCTTCTTATCCATTGCACAATGGCTTAATGCTTCATAATCAACCTGTTGATTCTCTTAGTCAAGTCAGACTTGGACAATCAATCTTTGGAAGCAATATTGGGACAAATAATGTCCAGCCAAAAATGTTGGGATGCTATGCAAACCCACCTTATCAAGCAAACAGTTCATTCAATAATGCAGGTGCTATGTTTCCTACATATGGAATGGGACATTGCATGACGACTTCAACAAATGGCCTCACAAGAAGAGGTTTGAGATATGGTGACCAAATGTACCAAAATTATGATTCATTGGGAACTAACAAATTTAGCTATGGTCTAGGAAATTGCAACATGGGATCTTTGAGCACCTCTAATCTGCCATCGACTTGTACTTCTTATCCTAGCAGTAACTCCTCTGTAGTTCAACTGAATGGTGGATCAAAAACTGTTGGGACTGGGAACAATGATAGTTTTGGCTTGATTAATGAGACTCAAAATGCAAATATGGATGTAGCAATCTTGGGGAATGTAAATTTTGGTTTGGTACAAAGAGGGCTTGCTTCTACTTCTGATTCTAATGTTGGGAATGGTTTTATAAGTGCGCTTCCAACTACATTGATGACTAATGGAACTCGAGAAGAAAATATTCCAGGGATCTCACAATTACCTCAGCAACTAGATGACAATGTTGTAGAAAATGAGCATAAATATAATGCCACTTCAATATGTGAGATCATCAGCAGCCAACTGGAAGACGATCTTTCTGAGCTTTTCTTGATGGTAGATGATATGCAACTTCTTAATAATGAGACAGAAGAGAACCCTAATGCAAGTGAATTTTTAAATTCTGACTTTTCTAGCTCTAGTCAGGTTGTGCAATCATTTGAGCAGTCTAATAGTAGAGCTGGTGATGATGTGATTGTGTTGCCAACTAAAGACACATTAAACTTTCCAAACGAGTCTTCAACAAGCTCTGACAAAAATTCTAATCAGATGCAAGGCAATGGGGAATCTGGGGACTGGGAACACTTTGATAGGTTCTTAGTGGACAATGTATCTTCAGCAAGTAACTCAACTTCTGAGCAGGATTGGGATATGGACATCATTGAAGCTTTGTTTGGTACCGAGAATCAACCAGATTCCAAAGGCATGAGGAGGATGCCTCCGGCAGTTTTAGGTGGTGAATTGTGA 1770 0.3864 MACERVDISILVVDDDETSLTIVSNVLISWEYKVLTANSARNALETLREFEGFFDLVITELHISGIDGFEFQKRVKDEFQLPVIRAVPKKILEIMNVPNLTRENIASHLQKYRIFLRKVAERGIIEGLSERTLRSRFASGVSALMIKEIQTRTEKLCVPVQQYLKRLAHQKGIRGIVNDLHDKQVSSNAYMTNQLGRGQSSYPLHNGLMLHNQPVDSLSQVRLGQSIFGSNIGTNNVQPKMLGCYANPPYQANSSFNNAGAMFPTYGMGHCMTTSTNGLTRRGLRYGDQMYQNYDSLGTNKFSYGLGNCNMGSLSTSNLPSTCTSYPSSNSSVVQLNGGSKTVGTGNNDSFGLINETQNANMDVAILGNVNFGLVQRGLASTSDSNVGNGFISALPTTLMTNGTREENIPGISQLPQQLDDNVVENEHKYNATSICEIISSQLEDDLSELFLMVDDMQLLNNETEENPNASEFLNSDFSSSSQVVQSFEQSNSRAGDDVIVLPTKDTLNFPNESSTSSDKNSNQMQGNGESGDWEHFDRFLVDNVSSASNSTSEQDWDMDIIEALFGTENQPDSKGMRRMPPAVLGGEL 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi795g00002 589 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 79 377 IPR044841 GO:0003700|GO:0006355
Gabi795g00002 589 SUPERFAMILY Homeodomain-like 85 118 IPR009057 -
Gabi795g00002 589 MobiDBLite consensus disorder prediction 570 589 - -
Gabi795g00002 589 MobiDBLite consensus disorder prediction 507 530 - -
Gabi795g00002 589 NCBIfam myb-like DNA-binding domain, SHAQKYF class 85 114 IPR006447 GO:0003677
Gabi795g00002 589 Gene3D - 4 62 - -
Gabi795g00002 589 MobiDBLite consensus disorder prediction 506 534 - -
Gabi795g00002 589 ProSiteProfiles Response regulatory domain profile. 9 145 IPR001789 GO:0000160
Gabi795g00002 589 SMART REC_2 8 137 IPR001789 GO:0000160
Gabi795g00002 589 Gene3D - 63 120 - -
Gabi795g00002 589 Pfam Response regulator receiver domain 10 84 IPR001789 GO:0000160
Gabi795g00002 589 SUPERFAMILY CheY-like 8 84 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi795g00002 Gabi-Chr795 66312 80110 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi795g00002 6 84 Response Regulator Gene Family AT5G07210 35.000 5.30e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi795g00002 Response_reg 9.9e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi795g00002 - K14491 aprc:113866677 448.743