LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi795g00001	ATGGCTTGTGAGAGAGTTGATATCTCTATTTTGGTTGTGGATGATGATGAAACTTCTCTGGCCATCGTTGCTAATGTACTCATCTCATGGGAATATAAAGGGGCCGTGCCAAAGAAAATTCTCGAAATCATGAATGTGCCAAACTTGACAAGAGAAAATATTGCCAGTCACTTGCAGAAGTATCGCATTTTCCTGAGAAAAGTTGCAGAGAGAGGAATAATTGAGGGCTTATCTGAGAGGACACTAAGGTCAAGGTTTGGAAGCAATATTGGGACAAATAATGTCAAGCCAAAAATGTTGGGATGCTATGCAAACCCACCTTATCAAGCAAACAGTTCATTCAATAATGCAGGTGCTATGTTTCCTACATATGGAATGGGACATTGCATGACGACTTCAACAAATGGCCTCACAAGAAGAGGTTTGAGATATGGTGACCAAATGTACCAAAATTATGATTCATTGGGAACTAAGAAATTTAGCTATGGTCTAGGAAATTACAACATGGGATCTTTGAGCACCTCTAATCTGCCCTCGACTTGTACTTCTTATCCTAGCAGTAACTCCTCTGTAGTTCAACTGAATGGTGGATCAAAAACTGTTGGGACTGGGAACAATGATAGTTTTGGCTTGATTAATGAGACTCAAAATGCAAATATGGATGTAGCAAACTTGGGGAATGTAAATTTTGGTTTGGTACAAAGAGGGCTTGCTTCTACTTCTGGTTCTAATGTTGGGAATGGTTTTATAAGTGAGCTTCCAACAACATTGATGACTAATGGAACTCGAGAAGAAAATATTCCAGCGATCCCACAATTACCTCAGCAACTAGATGACAATGTTGTAGAAAATGAGCATAAATATAATGCCACTTCAATATGTGAGATCATCAGCAGCCAACTGGAAGACGATCTTTCTGAGCTTTTCTTGATGGTAGATGATATGCAACTTCTTAATAATGAGACAGAAGAGAACCTTGATGCAAGTGAATTTTTAAATTTTGACTTTTCTAGCTCTAGTCAGGTTGTGCAATCATTTGAGCAGTCTAATAGTAGAGCTGGTGATGATGTCATTGTGTTGCCAACTAAAGACACATTAAACTTTCCAAACGAGTCTTCAACAAGCTCTGACAAAAATTCTAATCAGATGCAAGGCAATGAGGAATCTGGGGACTGGGAACACTTTGATAGGTTCTTAGTGGACAATGTTTCTTCAGCAATTAACTCAACTTCTGAGCTGGATTGGGATATGGACATCATTGAAGCTTTGTTTGGTACCGAGAATCAGCCAAATTCCAAAGGCATGAGGAGGATGCCTCCGGCACTTTTAGGTGGTGTATGGTGA	1344	0.3943	MACERVDISILVVDDDETSLAIVANVLISWEYKGAVPKKILEIMNVPNLTRENIASHLQKYRIFLRKVAERGIIEGLSERTLRSRFGSNIGTNNVKPKMLGCYANPPYQANSSFNNAGAMFPTYGMGHCMTTSTNGLTRRGLRYGDQMYQNYDSLGTKKFSYGLGNYNMGSLSTSNLPSTCTSYPSSNSSVVQLNGGSKTVGTGNNDSFGLINETQNANMDVANLGNVNFGLVQRGLASTSGSNVGNGFISELPTTLMTNGTREENIPAIPQLPQQLDDNVVENEHKYNATSICEIISSQLEDDLSELFLMVDDMQLLNNETEENLDASEFLNFDFSSSSQVVQSFEQSNSRAGDDVIVLPTKDTLNFPNESSTSSDKNSNQMQGNEESGDWEHFDRFLVDNVSSAINSTSELDWDMDIIEALFGTENQPNSKGMRRMPPALLGGVW	447

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi795g00001	447	MobiDBLite	consensus disorder prediction	364	389	-	-
	Gabi795g00001	447	PANTHER	HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	32	302	IPR044841	GO:0003700\|GO:0006355
	Gabi795g00001	447	Gene3D	-	19	69	-	-
	Gabi795g00001	447	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	34	63	IPR006447	GO:0003677
	Gabi795g00001	447	MobiDBLite	consensus disorder prediction	365	388	-	-
	Gabi795g00001	447	SUPERFAMILY	Homeodomain-like	31	67	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi795g00001	Gabi-Chr795	23310	29013	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi795g00001	35	152	Response Regulator Gene Family	AT5G07210	42.857	1.29e-16	80.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-G2-like	Gabi795g00001		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi795g00001	-		-	aprc:113866677	302.367