Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi792g00012 ATGTTTGACTCTGGTTACAAGTCACAGTATATTGGAGGCCAGAAGGAAAAGTTTGTAAGGTATATAATACAAAAGTTGGATGATCTGGATTCAAATTTGTCAATGCCATCTAGCTCAAGTGGGATGAAGAAATTAAGGTTTAATTTAGATTCTTTGCCATTGCCAATTCCTGGTCGTGGAAGAAAGAATGCATCGAAATCATTTAGGCTAGGAGTGAAGAGAGGATCAGAGGGAATAAAAACAATTGGAAGATCACTCAAAAGTGGAGTAACATGGGCAGTGTTTCCAGAAGATCTTAAAGTGTCAGAGAAAAAAGTATTTGATCCTCAAGATAAGAACCTTTTGTATTGGAACAAGTTTTTTGAGATTCTATGCATTTTTTCTGTAGCTTGTGATCCTTTCTTCTTTTATCTTCCTTATTTCAACCACAAATCATTTTGCCTCGCAATAGATAACGAGCTAGCAAGTTTTGCTGTCACACTCAGAACAATATTTGATGTTTTTTATCTCCTCCGCATAAGTTTTCAATTCCGCACTGCTTACATTGCACCTTCATCTCGGGTGTTTGGACGAGGTGAACTTGTCATTGATCCTGCAAAGATTGCTAAGAGATATTTACGACGTTACTTCATTGTTGATTTCATTTCTGTGCTTCCTGTGCCACAGATTGTAGTGTGGAAATATCTTTACAGTAACAAACGTGCACAGGTATTGGGCACAAAAACGGCACTGTTGAGAATTGTCATCCTCCAATACTTTCCAAGATTTCTACGCTTTATACCTTTAGCTTCAGAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAAAATGCATTCATCGGTGCCATGTACTATTTGATCTGGTACATGCTTGCTAGTCACATAACAGGCTCTGTCTGGTACTTACTGGCCATAGAACGTAATGACACATGCTGGAAGAATGCTTGTTATGAAGTTGAAGGATGCAATACACATTTCTTGTACTGTGGGAGTTCGAATAAGCATATGTCAGGGTATGAAAGTTGGAGAAATGTCAGTGAGACTGTTCTTAAAAGTCGCTGCTTTGTTCGGGAAGATAACTCAGAATTTAATTATGGAATCTTCTCTCAAGCTATACAGTCTGATATTGTTGCTTCCATAGAAGTGTTTCCTAAATTTTGTTACTGTTTATGGTGGGGCCTTCAAAACTTGAGTACACTTGGTCAGGGGCTTCTAACCAGTACCTACCCTGGAGAGGTTATGTTTTCCATAGTAATAGCTATTATGGGGCTACTCCTTTTTTCTCTTCTGATTGGAAACATGCAGACCTACCTTCAATCAATGTCAGTTCGTCTTGAGGAAATGAGGATCAAAAGGCGTGACTCTGAGCAGTGGATGCATCATCGCTTGCTTCCTCCGGAGCTAAGGCAAAGAGTCAGACGCTATGACCAATACAAGTGGCTTAACACCCGAGGAGTAGATGAAGAGAGCTTGGTTCAAAGTCTTCCAAAAGATCTCAGGAGAGATATCAAACGGCATCTTTGTTTGAATTTGGTCAGAAGGGTTCCTCTCTTTGCTAACATGGACGAACGCTTGCTTGATGCTATATGTGAGCGATTGAAACCAAGTTTGTATACAGAGAGCACTTACATAGTTAGGGAAGGAGATCCAGTTAATGAGATGCTTTTCATCATAAGGGGTCGTCTAGAGAGTGTTACTACAGATGGCGGAAGAAGTGGATTTTTCAACAGAGGTCTTCTGAAAGAAGCTGACTTCTGTGGTGAAGAGTTACTGACATGGGCACTGGACCCAAAATCTGCTGCTAACTTGCCATCATCTACAAGAACAGTGAAGGCTATAAATGAGGTTGAGGCATTTGCTTTGGAAGCAGAGGAGTTGAAGTTTGTTGCTTCACAGTTTAGGCACATTCACAGTAGACAAGTTCAGCACACCTTCCGTTTCTACTCTCAACAGTGGAGAACATGGGCTGCAATCTTCATTCAAGCTGCATGGAGGCGCCATTATAGGAGAAAAATTGCAGAGCAGCGCAGGAAGGAGGAAGAAGAATCATATGATTCTGATTATGAAGGAGGTGATGATTCTGCAAGGGCCTTGGTTCCACATAATGAAAGTTCTTCTGGTTTTGGATTTGGTACTACTGTCTATGCTTCTCGCTTTGCTGCCAATGCACTTCGTGGTCATAGGCTACGTGTTGGAAGTTCCAGCAACTTTATGAAACTCCGAAAGCCCTCGGAACCTGACTTCAGTGTTTTTGACAAAGAGTGA 2262 0.4085 MFDSGYKSQYIGGQKEKFVRYIIQKLDDLDSNLSMPSSSSGMKKLRFNLDSLPLPIPGRGRKNASKSFRLGVKRGSEGIKTIGRSLKSGVTWAVFPEDLKVSEKKVFDPQDKNLLYWNKFFEILCIFSVACDPFFFYLPYFNHKSFCLAIDNELASFAVTLRTIFDVFYLLRISFQFRTAYIAPSSRVFGRGELVIDPAKIAKRYLRRYFIVDFISVLPVPQIVVWKYLYSNKRAQVLGTKTALLRIVILQYFPRFLRFIPLASEVKKTAGVFSENAFIGAMYYLIWYMLASHITGSVWYLLAIERNDTCWKNACYEVEGCNTHFLYCGSSNKHMSGYESWRNVSETVLKSRCFVREDNSEFNYGIFSQAIQSDIVASIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLLLFSLLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPELRQRVRRYDQYKWLNTRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEADFCGEELLTWALDPKSAANLPSSTRTVKAINEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIFIQAAWRRHYRRKIAEQRRKEEEESYDSDYEGGDDSARALVPHNESSSGFGFGTTVYASRFAANALRGHRLRVGSSSNFMKLRKPSEPDFSVFDKE 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi792g00012 753 CDD CAP_ED 516 647 IPR000595 -
Gabi792g00012 753 Pfam Ion transport protein 116 443 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi792g00012 753 Gene3D Jelly Rolls 514 634 IPR014710 -
Gabi792g00012 753 FunFam Cyclic nucleotide-gated ion channel 1 514 632 - -
Gabi792g00012 753 ProSiteProfiles cAMP/cGMP binding motif profile. 516 599 IPR000595 -
Gabi792g00012 753 FunFam Cyclic nucleotide-gated ion channel 1 443 507 - -
Gabi792g00012 753 Gene3D - 119 441 - -
Gabi792g00012 753 MobiDBLite consensus disorder prediction 674 695 - -
Gabi792g00012 753 SUPERFAMILY cAMP-binding domain-like 446 636 IPR018490 -
Gabi792g00012 753 SUPERFAMILY Voltage-gated potassium channels 109 438 - -
Gabi792g00012 753 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 98 747 - -
Gabi792g00012 753 Gene3D Helix hairpin bin 443 507 - -
Gabi792g00012 753 SMART cnmp_10 516 647 IPR000595 -
Gabi792g00012 753 ProSiteProfiles IQ motif profile. 652 681 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi792g00012 Gabi-Chr792 92828 96698 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi792g00012 6 747 Ion Channels AT1G15990 69.108 0.0 1018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi792g00012 K05391 - gmx:100810453 1292.72