Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi791g00005 ATGGCTGCAAAAGTTGATGTTATCCGTGATTTGACCCCATCGAAAGAGCAATGGAGAATCAAAGTCAGGGTTATCAGATTGTGGAGGCAACCGAACTTTCATCGACCGGAGATGGGCGAAAATGTGGAGATGGTTCTAATTGATGATCATGGTGGCAAGATTCAGGCTACTGTCCGCGGGTCATTGAGGATAAGAGATCAATTAGCAGAAGGTGGAATGTATGTCATACGTAATTTTGGTGTTGGCCTTAATAATGACAAATTTAAGCCAACACAACATGAGTATAGGCTTACTTTCAATTTGAGAACTGTTGTGACACCGATTGTTGATGCCATTCTTCCTATTAACGGTTTTTCATTCATGGAATTCGAGGATATTGAAAGCTATCCTAATGACACGGCATGTTTAGTAGACGTTATTGGATTTCTCTGCGGAATTGGTGACTCTAAGGAACACATGGTATCTGGAAAGAGGACAAAGATGATAGCTATTGAGCTCGACAATCTTAGGGGAGGGAGACTTAATTGTTCTTTATGGGAGAGCTATGCAGAAGAGCTTATTAAATATAATAGTGAAAATTCAAACAAGCAAACGATCATCATCGTTCAGTTTGCTCGAATGAAAAAGTTTATGGGTAAAATGGGATTGTCTAATACAAAATTTGCTACAAGACTACTTTTCAATGAGGATTGTGCTGAGGTTGAAGCATTCAGATCTAGATTTCCTGATGCACAGTCAGACAGTGCACAGAAACTAATGCAGCATTCAACCCAATCAATTAATTCACAATCAGCTGGTTTTTGGAAAGAATCTGCAGCAAAATTTATTTGTGACATCAAGGATTGTAAGGAGGCTATGACATGTGTTACGTATGGCACAATCAAGGGCATTGAATCTGCTTTTAATTGGTGGTACAAAGGCTGTAAAAAATGTACACATTCAGTCTTTGAAGATTTTGGAAAGTGGTATTGCAGAAATTGTGACATTCATCTGCCTACTTATCATCCAAAGTTCCGTTTGCAAGTAAGGGTTGTTGATGGCACAGACTCTGCTTCGTTTGTTTTGTTTGACAAAGATACAACAAATTTATTATGCCTTTCAGCTGCTGAATTGCGTGAACAGCATTTTCAGAGGGGTGGTGACTTGGACAAATACCCTCAAGAGATTGATGCTCTGATCGAAAACTCATATCTTTTTAAGATTAATGTCAAGAAAACTAATATTGATTCTTATGAGGAAAGTGCTTACCAAGTGAGCAGGGTTTGCTCCGATGAGGACATAATTCAATCATTCCTCAACGGTCAAATGGATGGACATGGATCAGTGCATGATGAACAACTTGGTGTACTTGAAAACACTGTTAGCCAAGTAGGGGAGAATTCATCTACTGTTCAAAAGACTTTGCAATTCAACGAAGAACATGAAGACAATGATTATTTGGATGTAACTCCTACCAGCAAACTTTCTGATACTTATCATACAAAAAAAGTTGATGATGCAAATATGGTTTTGGATTTGGTGGCAGTAACTCCTCCTACCAAACAATTAGACTTAAGGAAGACAAAAGCAGTTGAAGATGCAAATTTGGGTACTAATTTGCTGCCAGAAAATCCTGCCAACATATTTGCAGATACAGAAAGCGAAAAACCAGTGGGGGTTGCGGATTTGGTTCCATGTTTGAGACCAACTAAGGCCATAAAGATTGAGAAGGATTGA 1716 0.3869 MAAKVDVIRDLTPSKEQWRIKVRVIRLWRQPNFHRPEMGENVEMVLIDDHGGKIQATVRGSLRIRDQLAEGGMYVIRNFGVGLNNDKFKPTQHEYRLTFNLRTVVTPIVDAILPINGFSFMEFEDIESYPNDTACLVDVIGFLCGIGDSKEHMVSGKRTKMIAIELDNLRGGRLNCSLWESYAEELIKYNSENSNKQTIIIVQFARMKKFMGKMGLSNTKFATRLLFNEDCAEVEAFRSRFPDAQSDSAQKLMQHSTQSINSQSAGFWKESAAKFICDIKDCKEAMTCVTYGTIKGIESAFNWWYKGCKKCTHSVFEDFGKWYCRNCDIHLPTYHPKFRLQVRVVDGTDSASFVLFDKDTTNLLCLSAAELREQHFQRGGDLDKYPQEIDALIENSYLFKINVKKTNIDSYEESAYQVSRVCSDEDIIQSFLNGQMDGHGSVHDEQLGVLENTVSQVGENSSTVQKTLQFNEEHEDNDYLDVTPTSKLSDTYHTKKVDDANMVLDLVAVTPPTKQLDLRKTKAVEDANLGTNLLPENPANIFADTESEKPVGVADLVPCLRPTKAIKIEKD 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi791g00005 571 Gene3D - 113 252 IPR012340 -
Gabi791g00005 571 SUPERFAMILY Nucleic acid-binding proteins 7 110 IPR012340 -
Gabi791g00005 571 Pfam Replication factor-A C terminal domain 290 421 IPR013955 -
Gabi791g00005 571 SUPERFAMILY Nucleic acid-binding proteins 274 421 IPR012340 -
Gabi791g00005 571 PANTHER OS03G0429900 PROTEIN 7 425 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi791g00005 571 CDD RPA1_DBD_B_like 138 242 - -
Gabi791g00005 571 Gene3D - 254 429 IPR012340 -
Gabi791g00005 571 Pfam Domain of unknown function DUF223 43 107 IPR003871 -
Gabi791g00005 571 CDD RPA1_DBD_A_like 19 105 - -
Gabi791g00005 571 CDD RPA1_DBD_C 288 421 IPR047192 -
Gabi791g00005 571 Gene3D - 5 111 IPR012340 -
Gabi791g00005 571 SUPERFAMILY Nucleic acid-binding proteins 118 242 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi791g00005 Gabi-Chr791 121334 125118 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi791g00005 4 405 Core DNA Replication Machinery Family AT4G19130 23.023 1.93e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi791g00005 - - adu:107490971 313.923