Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi790g00011 ATGACTCCTATTTCGTGTTCAAGAAAAGAGTTCAAACCCACCGATGATGAACTCATCCAGTTGTTTCTTTACAATAAGGTCAACGGGAAACCATTGCCTAAAAATGTTAAGATTCTTAAATATGACTTATATGGTGAAAAGAACTCTTGGGAGATTTGGGAAGCCTTTGGAGGTTCTAACGCTTACGGTGGAACTGGCCTTTACTTCTTCACCACCTTAAAGAAAACGTTCTCCACTGGCACACGCCCGGTTCGCACCATTGGGTGCAGTTCTTGGGAAGCGGAATACAAGGGGGAAAAAGTTATGGCCAATGGCTCGATGCAATGTATTGAGATAAGGAAACGTTTATGA 351 0.4245 MTPISCSRKEFKPTDDELIQLFLYNKVNGKPLPKNVKILKYDLYGEKNSWEIWEAFGGSNAYGGTGLYFFTTLKKTFSTGTRPVRTIGCSSWEAEYKGEKVMANGSMQCIEIRKRL 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi790g00011 116 ProSiteProfiles NAC domain profile. 5 116 IPR003441 GO:0003677|GO:0006355
Gabi790g00011 116 SUPERFAMILY NAC domain 11 106 IPR036093 GO:0003677|GO:0006355
Gabi790g00011 116 Gene3D NAC domain 14 116 IPR036093 GO:0003677|GO:0006355
Gabi790g00011 116 PANTHER NAC TRANSCRIPTION FACTOR 56 10 116 - -
Gabi790g00011 116 Pfam No apical meristem (NAM) protein 10 115 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi790g00011 Gabi-Chr790 128979 129329 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi790g00011 11 116 NAC Transcription Factor Family AT3G15510 30.189 2.57e-09 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi790g00011 NAM 9.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi790g00011 - - lja:Lj0g3v0151399.1 146.747