Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi78g00007 ATGGAATTCGAAGATCATGAAGAGGAGCAAGAGGAAGAGCTGTGTATGGCGGCAGCGAGTTACGACTCGCTGTCCAACCCGTCCCGGGTGAAGATGCCAGGTGGCGCTGAAGCTATGATGGTGGCTCAGCCCTTGAGGAATAACAACGCCAAGGCAAGGTACAGGGAGTGCCTCAAGAACCACGCCGTCGGAATCGGTGGCCACGCCCTCGACGGTTGCGGAGAGTTCATGGCGGCGGGAACCGAAGGCACCCTCGAATCTCTCAAATGCGCCGCCTGCAACTGCCACCGCAATTTCCACCGCAAAGAGACAGAAACAGCCACCTTCGCCGGAGACCCGTATTTGTTGACCCACCACCACCACCATCACCAGCCGCCTCCGCCGCAATTCGGGGCGTATTATCGGACGCCGGGTGGGTACTTGCACGTGGCGGGGCAGCAGAGGGGTGCGGGGACGCTGGCGCTGCCGTCGACCTCCGGGGCAGGAGGTGGCGGAGGATGTGGGACCCAGAGCACGAGGGAGGATCAGGAGGACGTTTCGAACCCGAGTGCAGGAGGATTAGGGTCGAAGAAGAGGTACAGAACCAAGTTCTCGCAGGAACAGAAGGACAAGATGCTTGAGTTAGCTGAGAGATTGGGTTGGAGGATTCAGAAGCACGACGACGCTGTGATTCAAGAGTTCTGCAACGACACTGGTGTCAAGCGTCATGTTCTCAAGGTTTGGATGCATAACAACAAACACACTCTTGGTAAGAAGCCCTAG 762 0.5801 MEFEDHEEEQEEELCMAAASYDSLSNPSRVKMPGGAEAMMVAQPLRNNNAKARYRECLKNHAVGIGGHALDGCGEFMAAGTEGTLESLKCAACNCHRNFHRKETETATFAGDPYLLTHHHHHHQPPPPQFGAYYRTPGGYLHVAGQQRGAGTLALPSTSGAGGGGGCGTQSTREDQEDVSNPSAGGLGSKKRYRTKFSQEQKDKMLELAERLGWRIQKHDDAVIQEFCNDTGVKRHVLKVWMHNNKHTLGKKP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi78g00007 253 Gene3D - 174 251 - -
Gabi78g00007 253 SUPERFAMILY Homeodomain-like 178 251 IPR009057 -
Gabi78g00007 253 MobiDBLite consensus disorder prediction 163 183 - -
Gabi78g00007 253 MobiDBLite consensus disorder prediction 155 190 - -
Gabi78g00007 253 Pfam ZF-HD protein dimerisation region 52 104 IPR006456 -
Gabi78g00007 253 NCBIfam homeobox domain, ZF-HD class 190 246 IPR006455 -
Gabi78g00007 253 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 249 - -
Gabi78g00007 253 FunFam Zinc-finger homeodomain protein 2 176 251 - -
Gabi78g00007 253 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 103 IPR006456 -
Gabi78g00007 253 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 53 103 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi78g00007 Gabi-Chr78 125520 126884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi78g00007 1 249 ZF-HD Transcription Factor Family AT4G24660 48.193 1.82e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gabi78g00007 ZF-HD_dimer 2.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi78g00007 - - qsa:O6P43_025228 330.872