Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi784g00013 ATGCCAGCCACTATTATGATTCCGGCGAGAAACATGCCCTCGATGCTTGGAAGAAACAACAACGTTGTTGGCGGGTTTGGATCATCCTCTGGTCTATCTCTTGGTCAGGTCGATATGTTCCAGCCAAATTTGATGGAAGGTGGTCAGCTTCTTCCACTGGACATGGCTCCAAACACTTCGGAGAGTGATGTCCCTAGAATCCGTGAAGATGAGTTCGACAGTGCTACTAAGTCTGGAAGTGAAAACCAAGAAGGTGCTTCTGGTGAAGACCAAGAACCTCGCCCCAAAAAGAAGCGTTACCATCGTCACACCCAGCACCAGATCCAGGAAATGGAAGCTTTCTTCAAGGAGTGTCCCCACCCAGACGACAAGCAAAGGAGGGAACTGAGCCAGGAGTTAGGGTTAGAGCCATTGCAGGTCAAGTTTTGGTTCCAAAACAAGCGCACTCAGATGAAGACTCAACATGAACGCCACGAGAACACACAGCTTAGAAACGACAATGAAAAGCTTCGAACGGATAACATGAGGTATAGGGAAGCTCTTAGCAATGCTTCATGTCCTAATTGTGGTGGACCAACTGCTATCGGTGAAATGTCATTTGATGAACATCACTTGAGGATTGAAAATGCTAGGCTAAGAGAAGAGATTGATAGGATTTCAGCAATTGCTGCCAAGTACGTAGGCAACAAGCCTGTGGTGAATTATTCAAACATCTCATCTTCTCTCCCTCCTCGTCCATTGGAACTTGGTGTTGGTGCTGGTTTTGGTGTCCAACAAGGGATTGGTGTGGATATGTATGGTGCTGGAGATATTTTGAGGTCAATTAGTGGACCTAGTGAAGCTGATAAACCAATAATAATAGAGCTTGCTGTAGCAGCTATGGAAGAGCTCATTGGGATGGCACAAATGGGTGAACCTCTTTGGTTAACAACCCTTGATGGCACTGCCACAATGCTAAATGAGGATGAATATATCAGGTCTTTTCCTCGAGGAATTGGCCCAAAACCTGCTGGCTTCAGATGTGAAGCTTCACGAGAAACTGCTGTTGTTATCATGAATCATGTCAACCTCGTTGAGATTCTCATGGATGTGAACCAATGGTCTACAGTGTTCTCTGGTATTGTCTCAAGAGCCATGACTTTGGAAGTGCTATCTACAGGAGTGGCGGGGAACTACAATGGTGCTTTGCAAGTGATGACGACAGAATTACAAGTACCTACACCTCTAGTGCCAACTCGTGAGAGTTATTTTGTAAGGTACTGTAAACAACATACAGATGGGACTTGGGCAGTTGTGGATGTGTCCTTGGATAATTTGCGCCCTAGTCCTTCAGTGAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAATTGCCAAATGGCTATTCAAAGGTGACATGGGTTGAGCATGTGGAAGTGGATGATAGAGGTGTTCATAATCTTTACAAGCAGCTTGTTAGCACTGGACATGCATTTGGTGCAAAACGTTGGGTTGGAACCTTAGATCGACAATGTGAAAGGCTAGCTAGCGCCATGGCAACAAACATTCCCACTGTAGATGTTGGAGTGATAACAAACCAAGAAGGGAGGAAGAGTATGTTGAAACTGGCTGAGAGAATGGTTATAAGCTTTTGTGCTGGAGTGAGTGCTTCAACTGCACATACATGGACAACACTTTCTGGAACCGGAGCTGATGATGTTAGGGTCATGACACGAAAGAGTGTAGATGACCCTGGAAGACCTCCTGGTATTGTTCTCAGTGCTGCAACTTCTTTTTGGCTCCCAGTTTCACCTAAACGAGTTTTTGACTTCCTACGTGATGAGAATTCCAGAAGTGAGTGGGATATTCTTTCCAATGGTGGAGTTGTCCAAGAAATGGCACACATTGCAAATGGACGAGAAACTGGAAATTGTGTGTCTCTACTTAGAGTAAATAGTGCCAATTCAAGCCAGAGCAACATGTTGATATTACAAGAGAGTTGCACCGATTCAACAGGCTCTTTTGTCATTTATGCTCCAGTAGACATTGCTGCTATGAATATTGTTCTAAATGGAGGTGACCCTGACTATGTTGCCCTTCTTCCTTCTGGGTTTGCTATTCTCCCTGATGGAACCACACCTCATGGAAGTGGCATTGTTGAAACTGCTTCTGGTGGATCTCTCTTAACTGTTGCATTTCAAATATTGGTTGATTCAGTTCCAACTGCTAAGCTTTCTCTTGGATCTGTTGCTACTGTTAATAACCTTATTGCCTGCACTGTTGAGAGAATCAAAGCTTCCTTAACCGGTGAAGCTGCTTGA 2304 0.4462 MPATIMIPARNMPSMLGRNNNVVGGFGSSSGLSLGQVDMFQPNLMEGGQLLPLDMAPNTSESDVPRIREDEFDSATKSGSENQEGASGEDQEPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRRELSQELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRNDNEKLRTDNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRIENARLREEIDRISAIAAKYVGNKPVVNYSNISSSLPPRPLELGVGAGFGVQQGIGVDMYGAGDILRSISGPSEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGTATMLNEDEYIRSFPRGIGPKPAGFRCEASRETAVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTTELQVPTPLVPTRESYFVRYCKQHTDGTWAVVDVSLDNLRPSPSVRCRRRPSGCLIQELPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGHAFGAKRWVGTLDRQCERLASAMATNIPTVDVGVITNQEGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVSPKRVFDFLRDENSRSEWDILSNGGVVQEMAHIANGRETGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIAAMNIVLNGGDPDYVALLPSGFAILPDGTTPHGSGIVETASGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLTGEAA 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi784g00013 767 SMART START_1 288 508 IPR002913 GO:0008289
Gabi784g00013 767 Pfam Homeodomain 97 152 IPR001356 GO:0003677
Gabi784g00013 767 SUPERFAMILY Bet v1-like 281 510 - -
Gabi784g00013 767 CDD START_ArGLABRA2_like 283 507 - -
Gabi784g00013 767 FunFam Homeobox-leucine zipper protein HDG1 82 170 - -
Gabi784g00013 767 SUPERFAMILY Homeodomain-like 85 154 IPR009057 -
Gabi784g00013 767 MobiDBLite consensus disorder prediction 72 106 - -
Gabi784g00013 767 Pfam START domain 289 508 IPR002913 GO:0008289
Gabi784g00013 767 Coils Coil 160 180 - -
Gabi784g00013 767 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 94 762 IPR042160 -
Gabi784g00013 767 Gene3D - 339 497 IPR023393 -
Gabi784g00013 767 ProSitePatterns 'Homeobox' domain signature. 129 152 IPR017970 GO:0000981|GO:0006355
Gabi784g00013 767 FunFam Homeobox-leucine zipper protein GLABRA 2 288 507 - -
Gabi784g00013 767 ProSiteProfiles START domain profile. 279 511 IPR002913 GO:0008289
Gabi784g00013 767 Gene3D - 82 171 - -
Gabi784g00013 767 SMART HOX_1 95 158 IPR001356 GO:0003677
Gabi784g00013 767 SUPERFAMILY Bet v1-like 527 759 - -
Gabi784g00013 767 CDD homeodomain 97 155 IPR001356 GO:0003677
Gabi784g00013 767 ProSiteProfiles 'Homeobox' domain profile. 94 154 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi784g00013 Gabi-Chr784 81781 86481 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi784g00013 39 767 Homeobox Transcription Factor Family AT1G05230 76.934 0.0 1145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi784g00013 START 4.4e-60 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi784g00013 K09338 - gmx:100809556 1360.9