Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi784g00012 ATGCCAGCCACTATTATGATTCCGGCGAGAAACATGCCCTCGATGCTTGGAAGAAACAACAACGTTGTTGGCGGGTTTGGATCATCCTCTGGTCTATCTCTTGGTCAGCCAAATTTGATGGAAGGTGGTCAGCTTCTTCCACTGGACATGGCTCCAAACACTTCGGAGAGTGATGTCCCTAGAATCCGTGAAGATGAGTTCGACAGTGCTACTAAGTCTGGAAGTGAAAACCAAGAAGGTGCTTCTGGTGAAGACCAAGAACCTCGCCCCAAAAAGAAGCGTTACCATCGTCACACCCAGCACCAGATCCAGGAAATGGAAGCTTTCTTCAAGGAGTGTCCCCACCCAGACGACAAGCAAAGGAGGGAACTGAGCCAGGAGTTAGGGTTAGAGCCATTGCAGGTCAAGTTTTGGTTCCAAAACAAGCGCACTCAGATGAAGACTCAACATGAACGCCACGAGAACACACAGCTTAGAAACGACAATGAAAAGCTTCGAACGGATAACATGAGGTATAGGGAAGCTCTTAGCAATGCTTCATGTCCTAATTGTGGTGGACCAACTGCTATCGGTGAAATGTCATTTGATGAACATCACTTGAGGATTGAAAATGCTAGGCTAAGAGAAGAGATTGATAGGATTTCAGCAATTGCTGCCAAGTACGTAGGCAACAAGCCTGTGGTGAATTATTCAAACATCTCATCTTCTCTCCCTCCTCGTCCATTGGAACTTGGTGTTGGTGCTGGTTTTGGTGTCCAACAAGGGATTGGTGTGGATATGTATGGTGCTGGAGATATTTTGAGGTCAATTAGTGGACCTAGTGAAGCTGATAAACCAATAATAATAGAGCTTGCTGTAGCAGCTATGGAAGAGCTCATTGGGATGGCACAAATGGGTGAACCTCTTTGGTTAACAACCCTTGATGGCACTGCCACAATGCTAAATGAGGATGAATATATCAGGTCTTTTCCTCGAGGAATTGGCCCAAAACCTGCTGGCTTCAGATGTGAAGCTTCACGAGAAACTGCTGTTGTTATCATGAATCATGTCAACCTCGTTGAGATTCTCATGGATGTGAACCAATGGTCTACAGTGTTCTCTGGTATTGTCTCAAGAGCCATGACTTTGGAAGTGCTATCTACAGGAGTGGCGGGGAACTACAATGGTGCTTTGCAAGTGATGACGACAGAATTACAAGTACCTACACCTCTAGTGCCAACTCGTGAGAGTTATTTTGTAAGGTACTGTAAACAACATACAGATGGGACTTGGGCAGTTGTGGATGTGTCCTTGGATAATTTGCGCCCTAGTCCTTCAGTGAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAATTGCCAAATGGCTATTCAAAGGTGACATGGGTTGAGCATGTGGAAGTGGATGATAGAGGTGTTCATAATCTTTACAAGCAGCTTGTTAGCACTGGACATGCATTTGGTGCAAAACGTTGGGTTGGAACCTTAGATCGACAATGTGAAAGGCTAGCTAGCGCCATGGCAACAAACATTCCCACTGTAGATGTTGGAGTGATAACAAACCAAGAAGGGAGGAAGAGTATGTTGAAACTGGCTGAGAGAATGGTTATAAGCTTTTGTGCTGGAGTGAGTGCTTCAACTGCACATACATGGACAACACTTTCTGGAACCGGAGCTGATGATGTTAGGGTCATGACACGAAAGAGTGTAGATGACCCTGGAAGACCTCCTGGTATTGTTCTCAGTGCTGCAACTTCTTTTTGGCTCCCAGTTTCACCTAAACGAGTTTTTGACTTCCTACGTGATGAGAATTCCAGAAGTGAGTGGGATATTCTTTCCAATGGTGGAGTTGTCCAAGAAATGGCACACATTGCAAATGGACGAGAAACTGGAAATTGTGTGTCTCTACTTAGAGTAAATAGTGCCAATTCAAGCCAGAGCAACATGTTGATATTACAAGAGAGTTGCACCGATTCAACAGGCTCTTTTGTCATTTATGCTCCAGTAGACATTGCTGCTATGAATATTGTTCTAAATGGAGGTGACCCTGACTATGTTGCCCTTCTTCCTTCTGGGTTTGCTATTCTCCCTGATGGAACCACACCTCATGGAAGTGGCATTGTTGAAACTGCTTCTGGTGGATCTCTCTTAACTGTTGCATTTCAAATATTGGTTGATTCAGTTCCAACTGCTAAGCTTTCTCTTGGATCTGTTGCTACTGTTAATAACCTTATTGCCTGCACTGTTGAGAGAATCAAAGCTTCCTTAACCGGTGAAGCTGCTTGA 2289 0.446 MPATIMIPARNMPSMLGRNNNVVGGFGSSSGLSLGQPNLMEGGQLLPLDMAPNTSESDVPRIREDEFDSATKSGSENQEGASGEDQEPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRRELSQELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRNDNEKLRTDNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRIENARLREEIDRISAIAAKYVGNKPVVNYSNISSSLPPRPLELGVGAGFGVQQGIGVDMYGAGDILRSISGPSEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGTATMLNEDEYIRSFPRGIGPKPAGFRCEASRETAVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTTELQVPTPLVPTRESYFVRYCKQHTDGTWAVVDVSLDNLRPSPSVRCRRRPSGCLIQELPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGHAFGAKRWVGTLDRQCERLASAMATNIPTVDVGVITNQEGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVSPKRVFDFLRDENSRSEWDILSNGGVVQEMAHIANGRETGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIAAMNIVLNGGDPDYVALLPSGFAILPDGTTPHGSGIVETASGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLTGEAA 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi784g00012 762 SMART HOX_1 90 153 IPR001356 GO:0003677
Gabi784g00012 762 SUPERFAMILY Bet v1-like 276 505 - -
Gabi784g00012 762 CDD homeodomain 92 150 IPR001356 GO:0003677
Gabi784g00012 762 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981|GO:0006355
Gabi784g00012 762 FunFam Homeobox-leucine zipper protein HDG1 77 165 - -
Gabi784g00012 762 Gene3D - 334 492 IPR023393 -
Gabi784g00012 762 SUPERFAMILY Homeodomain-like 80 149 IPR009057 -
Gabi784g00012 762 MobiDBLite consensus disorder prediction 58 72 - -
Gabi784g00012 762 CDD START_ArGLABRA2_like 278 502 - -
Gabi784g00012 762 Coils Coil 155 175 - -
Gabi784g00012 762 FunFam Homeobox-leucine zipper protein GLABRA 2 283 502 - -
Gabi784g00012 762 SMART START_1 283 503 IPR002913 GO:0008289
Gabi784g00012 762 Gene3D - 77 166 - -
Gabi784g00012 762 Pfam Homeodomain 92 147 IPR001356 GO:0003677
Gabi784g00012 762 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 89 757 IPR042160 -
Gabi784g00012 762 MobiDBLite consensus disorder prediction 34 101 - -
Gabi784g00012 762 ProSiteProfiles START domain profile. 274 506 IPR002913 GO:0008289
Gabi784g00012 762 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677
Gabi784g00012 762 Pfam START domain 284 503 IPR002913 GO:0008289
Gabi784g00012 762 SUPERFAMILY Bet v1-like 522 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi784g00012 Gabi-Chr784 81781 86481 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi784g00012 62 762 Homeobox Transcription Factor Family AT1G05230 79.462 0.0 1145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi784g00012 START 4.3e-60 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi784g00012 K09338 - gmx:100782260 1359.74