Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi784g00009 ATGATACACAATGCAATGCGTTTCTTGGAACAGTGGAAGTTAATGCAGAATGATGTGGTTGCTGTCGTTGGTCCACAATCCTCTGGAGTGGCTCATATCATCTCTCATGTTGTTAATGAACTCCATGTACCTCTTCTGTCGTTCGGGGCAACTGATCCAACACTATCTGCTTTGCAATACCCATATTTTATCCGCACTACCCAAAGTGACTATTATCAGATGTTTGCTATTGCAGACTTTGTTGATTATTACAGATGGAAGGAGGTAATTGCTATTTTTGTAGATGATGATAATGGAAGGAATGGAATTTCTGTATTGGGTGATGCATTATCAAAGAAACGTGCCAAGATCTCTTACAAGGCTGCATTCCCTCTTGGAGCCACAGAAAGTGATATCAGTGACTTGTTAAATGAAGTAAACTTAATGGAATCACGGGTCTATGTTCTGCATGTTAATCCTGATTCCGGTTTAGCAATCTTTTCTATTGCCGACAAGCTACGAATGATGAGCAATGGTTATGTTTGGATTGCAACAGATTGGCTTCCTTCAGTGCTGGATTCGTTAGAGCCTGCTAACACTAACACAATGGATCATTTACAAGGGGTTGTGGCTTTTCGTCATCACATTCCTGATACTTATCTCAAAAAGAGTTTTGTCTCAAGGATGAAAAGCCCTAAAGCCAAGGACACTGCAAGCTTCAATTCTTATGCATTTTATGCATATGATTCTGTTTGGTTAGCAGCTCATGCCCTTGATGTTTTTCTCAATGAAGGTGGGAATATATCTTTCTCCAATGACCCTAAGTTGCGTGACACAAATGGAAGCATGTTGCATTTAGCATCACTTCGTACTTTTGATGGTGGCTCACAGTTTCTCCAGACAATTTTGAGAATAAATTTCACTGGTCTGAGTGGTCAAATTGAGTTTGACATGGATAAGAATTTAATTCATCCAGCATATGATATTCTTAATATTGGTGGTACTGGATCCCGTAGAATTGGTTATTGGTCTAATCACTCTGGTCTTTCAGTTATAGCACCTGAAATTTTGTATATGAAAAAATCATCTAACACTTCTTCAACGAGCAATCAACAACTATACAGTGTTTTATGGCCTGGTGAGGCTACAGCTACACCTAAGGGATGGGTATTTCCCAACAATGGAAAGCCACTGAGAATAGCAGTGCCAAACCGGGTAAGCTTCAAGGAGTTTGTTGCTAAAGACAAGAACCCACCATGGGTACAAGGCTATAGCATTGATATCTTTGAAGCAGCCTTAAACTTGTTGCCTTATCCTGTCCCAAGACAATATATATTATATGGAAATGGCGAAAGGAATCCTAACTACAATGAGCTCGTGGAACAGGTTGCACAAAATAACTTTGATGCAGCTGTTGGAGATGTTACAATTGTCACAAACAGGACAAGGATTGTGGATTTTACTCAACCTTTCTTGGAATCAGGGCTTGTTGTTGTTGTTCCTGTCAAGGAGGAGAAGTCAAGCCCTTGGTCTTTCCTTGAGCCATTCACTACTCAAATGTGGTGTGTCACTGGTGCTTTTTTTTTTTTTGTGGGAGCTGTTGTGTGGATTCTTGAGCACCGGCTCAATCCTGAGTTCCGTGGGCCACCAAGAAAGCAACTTATCACAATCTTTTGGTTTAGTTTATCAACAATGTTTTTCTCACACAGAGAGAACACTATGAGTGCTCTTGGGAGATTGGTGCTAATCATATGGCTCTTTGTGGTGTTAATTATCAATTCAAGCTACACAGCTAGCTTGACATCTATCCTCACTGTGCAGAAACTGTCATCACAAATTGCAGGAATTGACAGCTTGATCTCGAGTACTCAACCGATTGGAATTCAAGATGGGTCATTTGCACGGAAGTATCTGATAGAGGAACTCCATATAGCCGAATCTAGGATAGTTACATTGAAAAACATGCAGGATTATATTGATGCTCTTGAGCGTGGTCCAAGTGGTGGAGGGGTTGTGGCAATTGTTGATGAGCTTCCTTATATTGAGATCTTGATGTCCAGCGCCAACTGTAAGTTCAGAAATGTTGGACAGGAATTCACAAAAAGTGGCTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTATTGACTTGTCAACTGCTATTCTCCAACTCTCTGAGAATGGGAACCTGCAAAAGATTCATGACAAATGGTTTAGTAATGAAAAGGAGTGTGCAACCACTAATGTTAGTCCAGACAAACTATCTCTGACAAGCTTCTGGGGTCTCTTTCTAATATGTGGCATTGCATGTGTCCTAGCTTTGATTGTATTCTTTGCTAGAGTGTTATATCAATATACCAAGTTCAGCCCAGAGCCTGAGGAGGTTGATGAGGAAACTCAACCAAACAGGCTCAGAAGAACAAGCAGAACTCCTAGCTTCAAGGACTTGATTGTTTTTGTAGATAGAAAGGAAGCAGAAATCAAAGAGATACTTAAGCAGAATAAAAAAAGGAGACGCAGCCAGAGCTTGGAGGGGATATCCAATTCACCTACCTAG 2538 0.4082 MIHNAMRFLEQWKLMQNDVVAVVGPQSSGVAHIISHVVNELHVPLLSFGATDPTLSALQYPYFIRTTQSDYYQMFAIADFVDYYRWKEVIAIFVDDDNGRNGISVLGDALSKKRAKISYKAAFPLGATESDISDLLNEVNLMESRVYVLHVNPDSGLAIFSIADKLRMMSNGYVWIATDWLPSVLDSLEPANTNTMDHLQGVVAFRHHIPDTYLKKSFVSRMKSPKAKDTASFNSYAFYAYDSVWLAAHALDVFLNEGGNISFSNDPKLRDTNGSMLHLASLRTFDGGSQFLQTILRINFTGLSGQIEFDMDKNLIHPAYDILNIGGTGSRRIGYWSNHSGLSVIAPEILYMKKSSNTSSTSNQQLYSVLWPGEATATPKGWVFPNNGKPLRIAVPNRVSFKEFVAKDKNPPWVQGYSIDIFEAALNLLPYPVPRQYILYGNGERNPNYNELVEQVAQNNFDAAVGDVTIVTNRTRIVDFTQPFLESGLVVVVPVKEEKSSPWSFLEPFTTQMWCVTGAFFFFVGAVVWILEHRLNPEFRGPPRKQLITIFWFSLSTMFFSHRENTMSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSQIAGIDSLISSTQPIGIQDGSFARKYLIEELHIAESRIVTLKNMQDYIDALERGPSGGGVVAIVDELPYIEILMSSANCKFRNVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGNLQKIHDKWFSNEKECATTNVSPDKLSLTSFWGLFLICGIACVLALIVFFARVLYQYTKFSPEPEEVDEETQPNRLRRTSRTPSFKDLIVFVDRKEAEIKEILKQNKKRRRSQSLEGISNSPT 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi784g00009 845 CDD PBP1_GABAb_receptor_plant 5 344 IPR044440 -
Gabi784g00009 845 FunFam Glutamate receptor 502 632 - -
Gabi784g00009 845 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 14 797 IPR015683 -
Gabi784g00009 845 Gene3D - 386 501 - -
Gabi784g00009 845 PRINTS Metabotropic glutamate GPCR signature 54 73 IPR000337 GO:0004930|GO:0007186|GO:0016020
Gabi784g00009 845 PRINTS Metabotropic glutamate GPCR signature 73 89 IPR000337 GO:0004930|GO:0007186|GO:0016020
Gabi784g00009 845 PRINTS Metabotropic glutamate GPCR signature 89 106 IPR000337 GO:0004930|GO:0007186|GO:0016020
Gabi784g00009 845 PRINTS Metabotropic glutamate GPCR signature 22 48 IPR000337 GO:0004930|GO:0007186|GO:0016020
Gabi784g00009 845 FunFam Glutamate receptor 69 228 - -
Gabi784g00009 845 SUPERFAMILY Periplasmic binding protein-like I 13 383 IPR028082 -
Gabi784g00009 845 CDD GluR_Plant 389 732 - -
Gabi784g00009 845 PIRSF IGluLR_plant 4 844 IPR017103 -
Gabi784g00009 845 Gene3D - 13 317 - -
Gabi784g00009 845 Pfam Ligand-gated ion channel 734 764 IPR001320 GO:0015276|GO:0016020
Gabi784g00009 845 Gene3D - 625 737 - -
Gabi784g00009 845 Pfam Bacterial extracellular solute-binding proteins, family 3 414 733 IPR001638 -
Gabi784g00009 845 Gene3D - 69 342 - -
Gabi784g00009 845 FunFam Glutamate receptor 628 736 - -
Gabi784g00009 845 FunFam Glutamate receptor 386 502 - -
Gabi784g00009 845 Pfam Receptor family ligand binding region 14 326 IPR001828 -
Gabi784g00009 845 Gene3D - 502 624 - -
Gabi784g00009 845 SMART GluR_14 392 734 IPR001320 GO:0015276|GO:0016020
Gabi784g00009 845 SUPERFAMILY Periplasmic binding protein-like II 366 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi784g00009 Gabi-Chr784 24758 34941 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi784g00009 13 702 Ion Channels AT1G05200 67.391 0.0 1005
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi784g00009 K05387 - gmx:100802782 1368.99