Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi784g00008 ATGCAGAATGATGTGGTTGCTGTCGTTGGTCCACAATCCTCTGGAGTGGCTCATATCATCTCTCATGTTGTTAATGAACTCCATGTACCTCTTCTGTCGTTCGGGGCAACTGATCCAACACTATCTGCTTTGCAATACCCATATTTTATCCGCACTACCCAAAGTGACTATTATCAGATGTTTGCTATTGCAGACTTTGTTGATTATTACAGATGGAAGGAGGTAATTGCTATTTTTGTAGATGATGATAATGGAAGGAATGGAATTTCTGTATTGGGTGATGCATTATCAAAGAAACGTGCCAAGATCTCTTACAAGGCTGCATTCCCTCTTGGAGCCACAGAAAGTGATATCAGTGACTTGTTAAATGAAGTAAACTTAATGGAATCACGGGTCTATGTTCTGCATGTTAATCCTGATTCCGGTTTAGCAATCTTTTCTATTGCCGACAAGCTACGAATGATGAGCAATGGTTATGTTTGGATTGCAACAGATTGGCTTCCTTCAGTGCTGGATTCGTTAGAGCCTGCTAACACTAACACAATGGATCATTTACAAGGGGTTGTGGCTTTTCGTCATCACATTCCTGATACTTATCTCAAAAAGAGTTTTGTCTCAAGGATGAAAAGCCCTAAAGCCAAGGACACTGCAAGCTTCAATTCTTATGCATTTTATGCATATGATTCTGTTTGGTTAGCAGCTCATGCCCTTGATGTTTTTCTCAATGAAGGTGGGAATATATCTTTCTCCAATGACCCTAAGTTGCGTGACACAAATGGAAGCATGTTGCATTTAGCATCACTTCGTACTTTTGATGGTGGCTCACAGTTTCTCCAGACAATTTTGAGAATAAATTTCACTGGTCTGAGTGGTCAAATTGAGTTTGACATGGATAAGAATTTAATTCATCCAGCATATGATATTCTTAATATTGGTGGTACTGGATCCCGTAGAATTGGTTATTGGTCTAATCACTCTGGTCTTTCAGTTATAGCACCTGAAATTTTGTATATGAAAAAATCATCTAACACTTCTTCAACGAGCAATCAACAACTATACAGTGTTTTATGGCCTGGTGAGGCTACAGCTACACCTAAGGGATGGGTATTTCCCAACAATGGAAAGCCACTGAGAATAGCAGTGCCAAACCGGGTAAGCTTCAAGGAGTTTGTTGCTAAAGACAAGAACCCACCATGGGTACAAGGCTATAGCATTGATATCTTTGAAGCAGCCTTAAACTTGTTGCCTTATCCTGTCCCAAGACAATATATATTATATGGAAATGGCGAAAGGAATCCTAACTACAATGAGCTCGTGGAACAGGTTGCACAAAATAACTTTGATGCAGCTGTTGGAGATGTTACAATTGTCACAAACAGGACAAGGATTGTGGATTTTACTCAACCTTTCTTGGAATCAGGGCTTGTTGTTGTTGTTCCTGTCAAGGAGGAGAAGTCAAGCCCTTGGTCTTTCCTTGAGCCATTCACTACTCAAATGTGGTGTGTCACTGGTGCTTTTTTTTTTTTTGTGGGAGCTGTTGTGTGGATTCTTGAGCACCGGCTCAATCCTGAGTTCCGTGGGCCACCAAGAAAGCAACTTATCACAATCTTTTGGTTTAGTTTATCAACAATGTTTTTCTCACACAGAGAGAACACTATGAGTGCTCTTGGGAGATTGGTGCTAATCATATGGCTCTTTGTGGTGTTAATTATCAATTCAAGCTACACAGCTAGCTTGACATCTATCCTCACTGTGCAGAAACTGTCATCACAAATTGCAGGAATTGACAGCTTGATCTCGAGTACTCAACCGATTGGAATTCAAGATGGGTCATTTGCACGGAAGTATCTGATAGAGGAACTCCATATAGCCGAATCTAGGATAGTTACATTGAAAAACATGCAGGATTATATTGATGCTCTTGAGCGTGGTCCAAGTGGTGGAGGGGTTGTGGCAATTGTTGATGAGCTTCCTTATATTGAGATCTTGATGTCCAGCGCCAACTGTAAGTTCAGAAATGTTGGACAGGAATTCACAAAAAGTGGCTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTATTGACTTGTCAACTGCTATTCTCCAACTCTCTGAGAATGGGAACCTGCAAAAGATTCATGACAAATGGTTTAGTAATGAAAAGGAGTGTGCAACCACTAATGTTAGTCCAGACAAACTATCTCTGACAAGCTTCTGGGGTCTCTTTCTAATATGTGGCATTGCATGTGTCCTAGCTTTGATTGTATTCTTTGCTAGAGTGTTATATCAATATACCAAGTTCAGCCCAGAGCCTGAGGAGGTTGATGAGGAAACTCAACCAAACAGGCTCAGAAGAACAAGCAGAACTCCTAGCTTCAAGGACTTGATTGTTTTTGTAGATAGAAAGGAAGCAGAAATCAAAGAGATACTTAAGCAGAATAAAAAAAGGAGACGCAGCCAGAGCTTGGAGGGGATATCCAATTCACCTACCTAG 2496 0.4087 MQNDVVAVVGPQSSGVAHIISHVVNELHVPLLSFGATDPTLSALQYPYFIRTTQSDYYQMFAIADFVDYYRWKEVIAIFVDDDNGRNGISVLGDALSKKRAKISYKAAFPLGATESDISDLLNEVNLMESRVYVLHVNPDSGLAIFSIADKLRMMSNGYVWIATDWLPSVLDSLEPANTNTMDHLQGVVAFRHHIPDTYLKKSFVSRMKSPKAKDTASFNSYAFYAYDSVWLAAHALDVFLNEGGNISFSNDPKLRDTNGSMLHLASLRTFDGGSQFLQTILRINFTGLSGQIEFDMDKNLIHPAYDILNIGGTGSRRIGYWSNHSGLSVIAPEILYMKKSSNTSSTSNQQLYSVLWPGEATATPKGWVFPNNGKPLRIAVPNRVSFKEFVAKDKNPPWVQGYSIDIFEAALNLLPYPVPRQYILYGNGERNPNYNELVEQVAQNNFDAAVGDVTIVTNRTRIVDFTQPFLESGLVVVVPVKEEKSSPWSFLEPFTTQMWCVTGAFFFFVGAVVWILEHRLNPEFRGPPRKQLITIFWFSLSTMFFSHRENTMSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSQIAGIDSLISSTQPIGIQDGSFARKYLIEELHIAESRIVTLKNMQDYIDALERGPSGGGVVAIVDELPYIEILMSSANCKFRNVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGNLQKIHDKWFSNEKECATTNVSPDKLSLTSFWGLFLICGIACVLALIVFFARVLYQYTKFSPEPEEVDEETQPNRLRRTSRTPSFKDLIVFVDRKEAEIKEILKQNKKRRRSQSLEGISNSPT 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi784g00008 831 Gene3D - 611 723 - -
Gabi784g00008 831 SUPERFAMILY Periplasmic binding protein-like I 2 369 IPR028082 -
Gabi784g00008 831 Gene3D - 372 487 - -
Gabi784g00008 831 Pfam Bacterial extracellular solute-binding proteins, family 3 400 719 IPR001638 -
Gabi784g00008 831 Pfam Ligand-gated ion channel 720 750 IPR001320 GO:0015276|GO:0016020
Gabi784g00008 831 CDD PBP1_GABAb_receptor_plant 2 330 IPR044440 -
Gabi784g00008 831 FunFam Glutamate receptor 55 214 - -
Gabi784g00008 831 SUPERFAMILY Periplasmic binding protein-like II 352 720 - -
Gabi784g00008 831 Gene3D - 1 303 - -
Gabi784g00008 831 Gene3D - 55 328 - -
Gabi784g00008 831 Pfam Receptor family ligand binding region 2 312 IPR001828 -
Gabi784g00008 831 PRINTS Metabotropic glutamate GPCR signature 8 34 IPR000337 GO:0004930|GO:0007186|GO:0016020
Gabi784g00008 831 PRINTS Metabotropic glutamate GPCR signature 40 59 IPR000337 GO:0004930|GO:0007186|GO:0016020
Gabi784g00008 831 PRINTS Metabotropic glutamate GPCR signature 75 92 IPR000337 GO:0004930|GO:0007186|GO:0016020
Gabi784g00008 831 PRINTS Metabotropic glutamate GPCR signature 59 75 IPR000337 GO:0004930|GO:0007186|GO:0016020
Gabi784g00008 831 FunFam Glutamate receptor 372 488 - -
Gabi784g00008 831 FunFam Glutamate receptor 614 722 - -
Gabi784g00008 831 SMART GluR_14 378 720 IPR001320 GO:0015276|GO:0016020
Gabi784g00008 831 FunFam Glutamate receptor 488 618 - -
Gabi784g00008 831 CDD GluR_Plant 375 718 - -
Gabi784g00008 831 Gene3D - 488 610 - -
Gabi784g00008 831 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 8 783 IPR015683 -
Gabi784g00008 831 PIRSF IGluLR_plant 1 830 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi784g00008 Gabi-Chr784 24695 34940 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi784g00008 1 688 Ion Channels AT1G05200 67.442 0.0 1003
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi784g00008 K05387 - gmx:100802782 1365.52