Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi784g00004 ATGGTTATGGTCAAGACATTGTTCCTCTTGGTTTTCTGCATGTGGGTTCCCTCAGAAGTTGTGGGGAGGACGGTACCTTCAGCTACCACTGTGAATTCTACTGTTTCTTCAAGACCCAAGGTTGTGAAATTTGGAGCCCTATTTAATTTTAATTCTGTCATTGGAAGATCAGCAAAACCTGCTATTGTGGCTGCTGTTGATGATGTTAATTCTAATACAACCATTCTCCCTGGCATTGAGCTGCAAGTTATTTTACATGATACACAATGCAATGCGTTTCTTGGAACAGTGGAAGCTCTGCAGTTAATGCAGAATGATGTGGTTGCTGTCGTTGGTCCACAATCCTCTGGAGTGGCTCATATCATCTCTCATGTTGTTAATGAACTCCATGTACCTCTTCTGTCGTTCGGGGCAACTGATCCAACACTATCTGCTTTGCAATACCCATATTTTATCCGCACTACCCAAAGTGACTATTATCAGATGTTTGCTATTGCAGACTTTGTTGATTATTACAGATGGAAGGAGGTAATTGCTATTTTTGTAGATGATGATAATGGAAGGAATGGAATTTCTGTATTGGGTGATGCATTATCAAAGAAACGTGCCAAGATCTCTTACAAGGCTGCATTCCCTCTTGGAGCCACAGAAAGTGATATCAGTGACTTGTTAAATGAAGTAAACTTAATGGAATCACGGGTCTATGTTCTGCATGTTAATCCTGATTCCGGTTTAGCAATCTTTTCTATTGCCGACAAGCTACGAATGATGAGCAATGGTTATGTTTGGATTGCAACAGATTGGCTTCCTTCAGTGCTGGATTCGTTAGAGCCTGCTAACACTAACACAATGGATCATTTACAAGGGGTTGTGGCTTTTCGTCATCACATTCCTGATACTTATCTCAAAAAGAGTTTTGTCTCAAGGATGAAAAGCCCTAAAGCCAAGGACACTGCAAGCTTCAATTCTTATGCATTTTATGCATATGATTCTGTTTGGTTAGCAGCTCATGCCCTTGATGTTTTTCTCAATGAAGGTGGGAATATATCTTTCTCCAATGACCCTAAGTTGCGTGACACAAATGGAAGCATGTTGCATTTAGCATCACTTCGTACTTTTGATGGTGGCTCACAGTTTCTCCAGACAATTTTGAGAATAAATTTCACTGGTCTGAGTGGTCAAATTGAGTTTGACATGGATAAGAATTTAATTCATCCAGCATATGATATTCTTAATATTGGTGGTACTGGATCCCGTAGAATTGGTTATTGGTCTAATCACTCTGGTCTTTCAGTTATAGCACCTGAAATTTTGTATATGAAAAAATCATCTAACACTTCTTCAACGAGCAATCAACAACTATACAGTGTTTTATGGCCTGGTGAGGCTACAGCTACACCTAAGGGATGGGTATTTCCCAACAATGGAAAGCCACTGAGAATAGCAGTGCCAAACCGGGTAAGCTTCAAGGAGTTTGTTGCTAAAGACAAGAACCCACCATGGGTACAAGGCTATAGCATTGATATCTTTGAAGCAGCCTTAAACTTGTTGCCTTATCCTGTCCCAAGACAATATATATTATATGGAAATGGCGAAAGGAATCCTAACTACAATGAGCTCGTGGAACAGGTTGCACAAAATAACTTTGATGCAGCTGTTGGAGATGTTACAATTGTCACAAACAGGACAAGGATTGTGGATTTTACTCAACCTTTCTTGGAATCAGGGCTTGTTGTTGTTGTTCCTGTCAAGGAGGAGAAGTCAAGCCCTTGGTCTTTCCTTGAGCCATTCACTACTCAAATGTGGTGTGTCACTGGTGCTTTTTTTTTTTTTGTGGGAGCTGTTGTGTGGATTCTTGAGCACCGGCTCAATCCTGAGTTCCGTGGGCCACCAAGAAAGCAACTTATCACAATCTTTTGGTTTAGTTTATCAACAATGTTTTTCTCACACAGAGAGAACACTATGAGTGCTCTTGGGAGATTGGTGCTAATCATATGGCTCTTTGTGGTGTTAATTATCAATTCAAGCTACACAGCTAGCTTGACATCTATCCTCACTGTGCAGAAACTGTCATCACAAATTGCAGGAATTGACAGCTTGATCTCGAGTACTCAACCGATTGGAATTCAAGATGGGTCATTTGCACGGAAGTATCTGATAGAGGAACTCCATATAGCCGAATCTAGGATAGTTACATTGAAAAACATGCAGGATTATATTGATGCTCTTGAGCGTGGTCCAAGTGGTGGAGGGGTTGTGGCAATTGTTGATGAGCTTCCTTATATTGAGATCTTGATGTCCAGCGCCAACTGTAAGTTCAGAAATGTTGGACAGGAATTCACAAAAAGTGGCTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTATTGACTTGTCAACTGCTATTCTCCAACTCTCTGAGAATGGGAACCTGCAAAAGATTCATGACAAATGGTTTAGTAATGAAAAGGAGTGTGCAACCACTAATGTTAGTCCAGACAAACTATCTCTGACAAGCTTCTGGGGTCTCTTTCTAATATGTGGCATTGCATGTGTCCTAGCTTTGATTGTATTCTTTGCTAGAGTGTTATATCAATATACCAAGTTCAGCCCAGAGCCTGAGGAGGTTGATGAGGAAACTCAACCAAACAGGCTCAGAAGAACAAGCAGAACTCCTAGCTTCAAGGACTTGATTGTTTTTGTAGATAGAAAGGAAGCAGAAATCAAAGAGATACTTAAGCAGAATAAAAAAAGGAGACGCAGCCAGAGCTTGGAGGGGATATCCAATTCACCTACCTAG 2802 0.4094 MVMVKTLFLLVFCMWVPSEVVGRTVPSATTVNSTVSSRPKVVKFGALFNFNSVIGRSAKPAIVAAVDDVNSNTTILPGIELQVILHDTQCNAFLGTVEALQLMQNDVVAVVGPQSSGVAHIISHVVNELHVPLLSFGATDPTLSALQYPYFIRTTQSDYYQMFAIADFVDYYRWKEVIAIFVDDDNGRNGISVLGDALSKKRAKISYKAAFPLGATESDISDLLNEVNLMESRVYVLHVNPDSGLAIFSIADKLRMMSNGYVWIATDWLPSVLDSLEPANTNTMDHLQGVVAFRHHIPDTYLKKSFVSRMKSPKAKDTASFNSYAFYAYDSVWLAAHALDVFLNEGGNISFSNDPKLRDTNGSMLHLASLRTFDGGSQFLQTILRINFTGLSGQIEFDMDKNLIHPAYDILNIGGTGSRRIGYWSNHSGLSVIAPEILYMKKSSNTSSTSNQQLYSVLWPGEATATPKGWVFPNNGKPLRIAVPNRVSFKEFVAKDKNPPWVQGYSIDIFEAALNLLPYPVPRQYILYGNGERNPNYNELVEQVAQNNFDAAVGDVTIVTNRTRIVDFTQPFLESGLVVVVPVKEEKSSPWSFLEPFTTQMWCVTGAFFFFVGAVVWILEHRLNPEFRGPPRKQLITIFWFSLSTMFFSHRENTMSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSQIAGIDSLISSTQPIGIQDGSFARKYLIEELHIAESRIVTLKNMQDYIDALERGPSGGGVVAIVDELPYIEILMSSANCKFRNVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGNLQKIHDKWFSNEKECATTNVSPDKLSLTSFWGLFLICGIACVLALIVFFARVLYQYTKFSPEPEEVDEETQPNRLRRTSRTPSFKDLIVFVDRKEAEIKEILKQNKKRRRSQSLEGISNSPT 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi784g00004 933 Pfam Ligand-gated ion channel 822 852 IPR001320 GO:0015276|GO:0016020
Gabi784g00004 933 SUPERFAMILY Periplasmic binding protein-like I 37 471 IPR028082 -
Gabi784g00004 933 CDD PBP1_GABAb_receptor_plant 43 432 IPR044440 -
Gabi784g00004 933 SUPERFAMILY Periplasmic binding protein-like II 454 822 - -
Gabi784g00004 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 115 143 - -
Gabi784g00004 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 55 71 - -
Gabi784g00004 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 328 340 - -
Gabi784g00004 933 PIRSF IGluLR_plant 1 932 IPR017103 -
Gabi784g00004 933 FunFam Glutamate receptor 474 590 - -
Gabi784g00004 933 Gene3D - 713 825 - -
Gabi784g00004 933 CDD GluR_Plant 477 820 - -
Gabi784g00004 933 Gene3D - 157 430 - -
Gabi784g00004 933 Pfam Bacterial extracellular solute-binding proteins, family 3 502 821 IPR001638 -
Gabi784g00004 933 SMART GluR_14 480 822 IPR001320 GO:0015276|GO:0016020
Gabi784g00004 933 FunFam Glutamate receptor 590 720 - -
Gabi784g00004 933 Gene3D - 61 405 - -
Gabi784g00004 933 FunFam Glutamate receptor 716 824 - -
Gabi784g00004 933 Gene3D - 474 589 - -
Gabi784g00004 933 Pfam Receptor family ligand binding region 59 414 IPR001828 -
Gabi784g00004 933 FunFam Glutamate receptor 157 316 - -
Gabi784g00004 933 Gene3D - 590 712 - -
Gabi784g00004 933 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 885 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi784g00004 Gabi-Chr784 23918 34941 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi784g00004 38 787 Ion Channels AT1G05200 66.533 0.0 1082
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi784g00004 K05387 - gmx:100802782 1518.83