Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi77g00001 | ATGGGTCGTAAAAGATTACCTATGGAACTCATTCAAAATGAGAAAGATCGCAAGACAACATTTCTGAGGAGAAAGAGAGGCTTAATAAAGAAAGTTTACGAGTTTGCCACTCTTTGTGGGGTTGATGTTTGCGCAATTATCTATGCCTCCAACTTTGAAGGCCAAGAATTTGCTGAGCCTGAAACATGGCCTCAAGACAAAACAGAGGTATGTCGCATCATTCAAAAGTATCTTAACAGTGATAGTGATAGGCGTCCAAAAGTCTATGATATGCAAGAGTATTATAAGGATAGGATAAGAAAGGTTGAAGCTGAAATTTTCAATGCGCGCAAAGAGAGGCTCAAGATCATGTGTCCAACCTGGGATTATTCTTTCAATACTCTTACCACGGAACAACTGAATGCGTTTGTTAGTATGCTGGATGCTAAGATTGATGCCTGTAATAAAAAACTCACTAGTCTAAAACCAGACCCAAAGGGAAAAGCAATAGAAGAATCAGACAAGGGTGACACACTTGCTCTCAACATGGCCTCAAATACTAGTAGTCACCTTAATTTCATGATGTCTCAACCACAACCTTTCCCTCTCCATATGAAGGCAATTAGTGTTAACAACAAGCTGTCACTTTATCCATTTCATCTTGGCCAGAGTTCTCAATCTTCCGAGCTTCATTTTGGTCAAAACTTAACACAATTGGTGGGAAATAATGGAATTGTGGGTTGGGGTGATCAAGTTGGTCCTGTTACTCATATTCCCAAAAATGTTATGCTGAAGGAGGATACAGCTGAAAAAATTGAAAATCACCAACTATGCTATTACAATGGAAATATACAGACAATGCAGCCTAATACTATTGCTCCACAGACTCTTCCATTTCATGAAGCAGCTTATACCATGTTACAAGGTCAAATGTTCAACTGCAAGCAATGA | 930 | 0.3903 | MGRKRLPMELIQNEKDRKTTFLRRKRGLIKKVYEFATLCGVDVCAIIYASNFEGQEFAEPETWPQDKTEVCRIIQKYLNSDSDRRPKVYDMQEYYKDRIRKVEAEIFNARKERLKIMCPTWDYSFNTLTTEQLNAFVSMLDAKIDACNKKLTSLKPDPKGKAIEESDKGDTLALNMASNTSSHLNFMMSQPQPFPLHMKAISVNNKLSLYPFHLGQSSQSSELHFGQNLTQLVGNNGIVGWGDQVGPVTHIPKNVMLKEDTAEKIENHQLCYYNGNIQTMQPNTIAPQTLPFHEAAYTMLQGQMFNCKQ | 309 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi77g00001 | 309 | SUPERFAMILY | SRF-like | 1 | 64 | IPR036879 | GO:0003677|GO:0046983 | |
Gabi77g00001 | 309 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Gabi77g00001 | 309 | CDD | MADS_SRF_like | 2 | 61 | IPR033897 | GO:0000981|GO:0000987|GO:0045944 | |
Gabi77g00001 | 309 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 182 | - | - | |
Gabi77g00001 | 309 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Gabi77g00001 | 309 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Gabi77g00001 | 309 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Gabi77g00001 | 309 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Gabi77g00001 | 309 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 51 | IPR002100 | GO:0003677|GO:0046983 | |
Gabi77g00001 | 309 | Gene3D | - | 13 | 101 | IPR036879 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi77g00001 | Gabi-Chr77 | 19070 | 19999 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi77g00001 | 1 | 237 | Type I MADS-box Gene Family | AT5G55690 | 33.891 | 1.35e-26 | 103 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-M-type | Gabi77g00001 | SRF-TF | 2.2e-16 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi77g00001 | - | - | ccaj:109800518 | 319.316 |