Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi77g00001 ATGGGTCGTAAAAGATTACCTATGGAACTCATTCAAAATGAGAAAGATCGCAAGACAACATTTCTGAGGAGAAAGAGAGGCTTAATAAAGAAAGTTTACGAGTTTGCCACTCTTTGTGGGGTTGATGTTTGCGCAATTATCTATGCCTCCAACTTTGAAGGCCAAGAATTTGCTGAGCCTGAAACATGGCCTCAAGACAAAACAGAGGTATGTCGCATCATTCAAAAGTATCTTAACAGTGATAGTGATAGGCGTCCAAAAGTCTATGATATGCAAGAGTATTATAAGGATAGGATAAGAAAGGTTGAAGCTGAAATTTTCAATGCGCGCAAAGAGAGGCTCAAGATCATGTGTCCAACCTGGGATTATTCTTTCAATACTCTTACCACGGAACAACTGAATGCGTTTGTTAGTATGCTGGATGCTAAGATTGATGCCTGTAATAAAAAACTCACTAGTCTAAAACCAGACCCAAAGGGAAAAGCAATAGAAGAATCAGACAAGGGTGACACACTTGCTCTCAACATGGCCTCAAATACTAGTAGTCACCTTAATTTCATGATGTCTCAACCACAACCTTTCCCTCTCCATATGAAGGCAATTAGTGTTAACAACAAGCTGTCACTTTATCCATTTCATCTTGGCCAGAGTTCTCAATCTTCCGAGCTTCATTTTGGTCAAAACTTAACACAATTGGTGGGAAATAATGGAATTGTGGGTTGGGGTGATCAAGTTGGTCCTGTTACTCATATTCCCAAAAATGTTATGCTGAAGGAGGATACAGCTGAAAAAATTGAAAATCACCAACTATGCTATTACAATGGAAATATACAGACAATGCAGCCTAATACTATTGCTCCACAGACTCTTCCATTTCATGAAGCAGCTTATACCATGTTACAAGGTCAAATGTTCAACTGCAAGCAATGA 930 0.3903 MGRKRLPMELIQNEKDRKTTFLRRKRGLIKKVYEFATLCGVDVCAIIYASNFEGQEFAEPETWPQDKTEVCRIIQKYLNSDSDRRPKVYDMQEYYKDRIRKVEAEIFNARKERLKIMCPTWDYSFNTLTTEQLNAFVSMLDAKIDACNKKLTSLKPDPKGKAIEESDKGDTLALNMASNTSSHLNFMMSQPQPFPLHMKAISVNNKLSLYPFHLGQSSQSSELHFGQNLTQLVGNNGIVGWGDQVGPVTHIPKNVMLKEDTAEKIENHQLCYYNGNIQTMQPNTIAPQTLPFHEAAYTMLQGQMFNCKQ 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi77g00001 309 SUPERFAMILY SRF-like 1 64 IPR036879 GO:0003677|GO:0046983
Gabi77g00001 309 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi77g00001 309 CDD MADS_SRF_like 2 61 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gabi77g00001 309 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 182 - -
Gabi77g00001 309 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi77g00001 309 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi77g00001 309 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi77g00001 309 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi77g00001 309 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Gabi77g00001 309 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi77g00001 Gabi-Chr77 19070 19999 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi77g00001 1 237 Type I MADS-box Gene Family AT5G55690 33.891 1.35e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi77g00001 SRF-TF 2.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi77g00001 - - ccaj:109800518 319.316