Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi779g00011 ATGCCTAAGGCCAAAGCTGATGCAGTAGTTGCCGACAGCCGGTTGAAGCGCAAGGGTGCTGGAACCGGGAGGAAGCAGTCGAAGAAAGCTGCTAAGGATCCGAACAAGCCTAAGAGGCCTCCAAGTGCTTTCTTTGTTTTCATGGCTGAGTTCAGAGAGCAGTACAAGAAGGAGCATCCGAACAACAAATCCGTCTCCGTTGTCGGTAAAGCTAGCGGTGACAAATGGAAATCGATGTCCGATGCTGAGAAAGCTCCCTATGTTGCCAAGGCAGAGAAGAAGAAAGAAGAGTACGATAGGAGTATTCTAGCCTACAATAGGAAATTGGAGGGCAATAATCCTTCCGAAGAAGATGAGTCTGACAAATCAAAATCCGAAGTCCATGATGAGGATGAGGATGAGGAGGAAGAGGATGACGAGTGA 423 0.4823 MPKAKADAVVADSRLKRKGAGTGRKQSKKAAKDPNKPKRPPSAFFVFMAEFREQYKKEHPNNKSVSVVGKASGDKWKSMSDAEKAPYVAKAEKKKEEYDRSILAYNRKLEGNNPSEEDESDKSKSEVHDEDEDEEEEDDE 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi779g00011 140 CDD HMG-box_AtHMGB1-like 38 98 - -
Gabi779g00011 140 MobiDBLite consensus disorder prediction 57 140 - -
Gabi779g00011 140 MobiDBLite consensus disorder prediction 76 104 - -
Gabi779g00011 140 Gene3D High mobility group box domain 21 122 IPR036910 -
Gabi779g00011 140 Coils Coil 88 108 - -
Gabi779g00011 140 SMART hmgende2 36 107 IPR009071 -
Gabi779g00011 140 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Gabi779g00011 140 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Gabi779g00011 140 MobiDBLite consensus disorder prediction 111 127 - -
Gabi779g00011 140 SUPERFAMILY HMG-box 28 109 IPR036910 -
Gabi779g00011 140 PRINTS High mobility group (HMG1/HMG2) protein signature 90 110 - -
Gabi779g00011 140 PRINTS High mobility group (HMG1/HMG2) protein signature 3 23 - -
Gabi779g00011 140 PRINTS High mobility group (HMG1/HMG2) protein signature 71 90 - -
Gabi779g00011 140 MobiDBLite consensus disorder prediction 1 43 - -
Gabi779g00011 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 8 139 IPR031061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi779g00011 Gabi-Chr779 94753 96492 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gabi779g00011 HMG_box 4.2e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi779g00011 K25507 - gmx:100305957 184.496