Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi779g00010 ATGCCTAAGGCCAAAGCTGATGCAGTAGTTGCCGACAGCCGGTTGAAGCGCAAGGGTGCTGGAACCGGGAGGAAGCAGTCGAAGAAAGCTGCTAAGGATCCGAACAAGCCTAAGAGGCCTCCAAGTGCTTTCTTTGTTTTCATGGCTGAGTTCAGAGAGCAGTACAAGAAGGAGCATCCGAACAACAAATCCGTCTCCGTTGTCGGTAAAGCTAGCGGTGACAAATGGAAATCGATGTCCGATGCTGAGAAAGCTCCCTATGTTGCCAAGGCAGAGAAGAAGAAAGAAGAGTACGATAGGAGTATTCTAGCCTACAATAGGAAATTGGGCAATAATCCTTCCGAAGAAGATGAGTCTGACAAATCAAAATCCGAAGTCCATGATGAGGATGAGGATGAGGAGGAAGAGGATGACGAGTGA 420 0.481 MPKAKADAVVADSRLKRKGAGTGRKQSKKAAKDPNKPKRPPSAFFVFMAEFREQYKKEHPNNKSVSVVGKASGDKWKSMSDAEKAPYVAKAEKKKEEYDRSILAYNRKLGNNPSEEDESDKSKSEVHDEDEDEEEEDDE 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi779g00010 139 PRINTS High mobility group (HMG1/HMG2) protein signature 3 23 - -
Gabi779g00010 139 PRINTS High mobility group (HMG1/HMG2) protein signature 71 90 - -
Gabi779g00010 139 PRINTS High mobility group (HMG1/HMG2) protein signature 90 110 - -
Gabi779g00010 139 MobiDBLite consensus disorder prediction 1 42 - -
Gabi779g00010 139 SUPERFAMILY HMG-box 28 110 IPR036910 -
Gabi779g00010 139 MobiDBLite consensus disorder prediction 111 126 - -
Gabi779g00010 139 CDD HMG-box_AtHMGB1-like 38 98 - -
Gabi779g00010 139 MobiDBLite consensus disorder prediction 57 139 - -
Gabi779g00010 139 Coils Coil 88 108 - -
Gabi779g00010 139 SMART hmgende2 36 107 IPR009071 -
Gabi779g00010 139 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Gabi779g00010 139 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Gabi779g00010 139 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 8 138 IPR031061 -
Gabi779g00010 139 MobiDBLite consensus disorder prediction 76 103 - -
Gabi779g00010 139 Gene3D High mobility group box domain 20 110 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi779g00010 Gabi-Chr779 94735 96499 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gabi779g00010 HMG_box 4.1e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi779g00010 K25507 - gmx:100305957 177.948