Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi779g00004 ATGGGTCTCTGCTTTTCTTCTCCCTCTCGCTCTGAACTAAACACTTCTTCCCTCAACCGCCCTCAGTATTCAGGCAAGTCTTCAACTTTTCCACACACTGCCACGACAAGCAGCGCCGAGAAGAGTCAATTTTCGGAGATTACAAGTGGAAGCTTTGACGGCGATGGATCTGTTCCTCTTCCTTCCCCAGGTGGCCAGATTCTTGAAAGGCCAAACTTGAAGGTGTTCAGTTTTGGGGACTTGAAATCTGCAACAAAGAGTTTCAAATCTGATACATTGCTTGGTGAAGGTGGTTTTGGCAAAGTTTACAAGGGTTGGTTAGATGAGAAGACTCTCACACCTGCAAGAGCAGGCTCTGGGATGGTTGTTGCCATCAAAAAATTGAACCCAGAAAGCACGCAAGGATTTCAAGAGTGGCAGTCAGAAGTCAACTTTTTGGGAAGGCTCTCTCACCCCAACCTGGTCAAATTATTGGGTTACTGTTGGGACGATGACGAGCTTCTTCTTGTGTATGAGTTCTTGCCGAGGGGAAGCTTGGAGAATCATCTCTTCAGAAGAAATCCTAACATAGAACCACTTTCTTGGAACACCCGAATTAAAATAGCTATTGGTGCAGCTCGGGGCTTGGCTTTCTTGCACACTTCTGAAAAGCAAGTCATATACAGAGATTTCAAGGCCTCAAATATACTCCTCGATGGGAATTACAATGCAAAGATATCAGATTTTGGCTTAGCTAAATTTGGGCCTTCCGGGGGAGATTCACATGTAACTACCAGGGTCATGGGCACATATGGTTATGCTGCTCCAGAATACATTGCAACAGGCCACTTGTACGTGAAGAGTGATGTGTACGGCTTCGGTGTTGTGTTGCTAGAAATGATGACAGGCATGCGAGCACTTGATACAAAGAGGCCAACAGGGCAGCAGAACCTGGTTGAATGGGTTAGGCCTTTACTCTCAAATAAAAGGAAGTTGAAAACCATAATGGATGCAAAGATAGAGGGCCAATATTCACTCAAGGCAGCATTGCAATCAGCACAGCTTACACTAAAATGCTTAGAATCTGATCCTAAACACCGTCCTTCTATGAAAGAAGTATTGGAGGCATTGGAAGGAATTGATGCTATTCAGGACAAATCCAAGAACCGCAATTCTCACCATCCTCAGCACCACAATTCTCATCAATCTCAACTTCATTCTCGGCAGAGAGTTGTACAAGTATAA 1224 0.4469 MGLCFSSPSRSELNTSSLNRPQYSGKSSTFPHTATTSSAEKSQFSEITSGSFDGDGSVPLPSPGGQILERPNLKVFSFGDLKSATKSFKSDTLLGEGGFGKVYKGWLDEKTLTPARAGSGMVVAIKKLNPESTQGFQEWQSEVNFLGRLSHPNLVKLLGYCWDDDELLLVYEFLPRGSLENHLFRRNPNIEPLSWNTRIKIAIGAARGLAFLHTSEKQVIYRDFKASNILLDGNYNAKISDFGLAKFGPSGGDSHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMMTGMRALDTKRPTGQQNLVEWVRPLLSNKRKLKTIMDAKIEGQYSLKAALQSAQLTLKCLESDPKHRPSMKEVLEALEGIDAIQDKSKNRNSHHPQHHNSHQSQLHSRQRVVQV 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi779g00004 407 CDD STKc_IRAK 94 373 - -
Gabi779g00004 407 MobiDBLite consensus disorder prediction 1 43 - -
Gabi779g00004 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Gabi779g00004 407 PANTHER OS01G0588500 PROTEIN-RELATED 36 373 - -
Gabi779g00004 407 FunFam Serine/threonine-protein kinase BIK1 58 173 - -
Gabi779g00004 407 ProSiteProfiles Protein kinase domain profile. 88 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi779g00004 407 SUPERFAMILY Protein kinase-like (PK-like) 66 371 IPR011009 -
Gabi779g00004 407 Pfam Protein tyrosine and serine/threonine kinase 91 370 IPR001245 GO:0004672|GO:0006468
Gabi779g00004 407 MobiDBLite consensus disorder prediction 380 407 - -
Gabi779g00004 407 FunFam Serine/threonine-protein kinase PBS1 174 389 - -
Gabi779g00004 407 Gene3D Phosphorylase Kinase; domain 1 72 173 - -
Gabi779g00004 407 Gene3D Transferase(Phosphotransferase) domain 1 174 399 - -
Gabi779g00004 407 ProSitePatterns Protein kinases ATP-binding region signature. 94 127 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi779g00004 Gabi-Chr779 9634 13881 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi779g00004 74 370 Glycoside Hydrolase AT3G07070 52.013 9.71e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi779g00004 PK_Tyr_Ser-Thr 7.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi779g00004 - - gmx:100794193 643.654