Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi779g00003 ATGGGTCTCTGCTTTTCTTCTCCCTCTCGCTCTGAACTAAACACTTCTTCCCTCAACCGCCCTCAGTATTCAGGCAACAGCGCCGAGAAGAGTCAATTTTCGGAGATTACAAGTGGAAGCTTTGACGGCGATGGATCTGTTCCTCTTCCTTCCCCAGGTGGCCAGATTCTTGAAAGGCCAAACTTGAAGGTGTTCAGTTTTGGGGACTTGAAATCTGCAACAAAGAGTTTCAAATCTGATACATTGCTTGGTGAAGGTGGTTTTGGCAAAGTTTACAAGGGTTGGTTAGATGAGAAGACTCTCACACCTGCAAGAGCAGGCTCTGGGATGGTTGTTGCCATCAAAAAATTGAACCCAGAAAGCACGCAAGGATTTCAAGAGTGGCAGTCAGAAGTCAACTTTTTGGGAAGGCTCTCTCACCCCAACCTGGTCAAATTATTGGGTTACTGTTGGGACGATGACGAGCTTCTTCTTGTGTATGAGTTCTTGCCGAGGGGAAGCTTGGAGAATCATCTCTTCAGAAGAAATCCTAACATAGAACCACTTTCTTGGAACACCCGAATTAAAATAGCTATTGGTGCAGCTCGGGGCTTGGCTTTCTTGCACACTTCTGAAAAGCAAGTCATATACAGAGATTTCAAGGCCTCAAATATACTCCTCGATGGGAATTACAATGCAAAGATATCAGATTTTGGCTTAGCTAAATTTGGGCCTTCCGGGGGAGATTCACATGTAACTACCAGGGTCATGGGCACATATGGTTATGCTGCTCCAGAATACATTGCAACAGGCCACTTGTACGTGAAGAGTGATGTGTACGGCTTCGGTGTTGTGTTGCTAGAAATGATGACAGGCATGCGAGCACTTGATACAAAGAGGCCAACAGGGCAGCAGAACCTGGTTGAATGGGTTAGGCCTTTACTCTCAAATAAAAGGAAGTTGAAAACCATAATGGATGCAAAGATAGAGGGCCAATATTCACTCAAGGCAGCATTGCAATCAGCACAGCTTACACTAAAATGCTTAGAATCTGATCCTAAACACCGTCCTTCTATGAAAGAAGTATTGGAGGCATTGGAAGGAATTGATGCTATTCAGGACAAATCCAAGAACCGCAATTCTCACCATCCTCAGCACCACAATTCTCATCAATCTCAACTTCATTCTCGGCAGAGAGTTGTACAAGTATAA 1191 0.4458 MGLCFSSPSRSELNTSSLNRPQYSGNSAEKSQFSEITSGSFDGDGSVPLPSPGGQILERPNLKVFSFGDLKSATKSFKSDTLLGEGGFGKVYKGWLDEKTLTPARAGSGMVVAIKKLNPESTQGFQEWQSEVNFLGRLSHPNLVKLLGYCWDDDELLLVYEFLPRGSLENHLFRRNPNIEPLSWNTRIKIAIGAARGLAFLHTSEKQVIYRDFKASNILLDGNYNAKISDFGLAKFGPSGGDSHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMMTGMRALDTKRPTGQQNLVEWVRPLLSNKRKLKTIMDAKIEGQYSLKAALQSAQLTLKCLESDPKHRPSMKEVLEALEGIDAIQDKSKNRNSHHPQHHNSHQSQLHSRQRVVQV 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi779g00003 396 FunFam Serine/threonine-protein kinase BIK1 47 162 - -
Gabi779g00003 396 MobiDBLite consensus disorder prediction 369 396 - -
Gabi779g00003 396 Gene3D Phosphorylase Kinase; domain 1 61 162 - -
Gabi779g00003 396 Gene3D Transferase(Phosphotransferase) domain 1 163 388 - -
Gabi779g00003 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Gabi779g00003 396 SUPERFAMILY Protein kinase-like (PK-like) 55 360 IPR011009 -
Gabi779g00003 396 ProSiteProfiles Protein kinase domain profile. 77 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi779g00003 396 MobiDBLite consensus disorder prediction 1 41 - -
Gabi779g00003 396 MobiDBLite consensus disorder prediction 1 54 - -
Gabi779g00003 396 FunFam Serine/threonine-protein kinase PBS1 163 378 - -
Gabi779g00003 396 CDD STKc_IRAK 83 362 - -
Gabi779g00003 396 Pfam Protein tyrosine and serine/threonine kinase 80 359 IPR001245 GO:0004672|GO:0006468
Gabi779g00003 396 PANTHER OS01G0588500 PROTEIN-RELATED 28 362 - -
Gabi779g00003 396 ProSitePatterns Protein kinases ATP-binding region signature. 83 116 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi779g00003 Gabi-Chr779 9634 13881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi779g00003 63 359 Glycoside Hydrolase AT3G07070 52.013 1.15e-103 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi779g00003 PK_Tyr_Ser-Thr 7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi779g00003 - - gmx:100794193 630.172